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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I02533.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 312aa MW: 36069.5 Da PI: 9.5807 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.8 | 1.2e-15 | 8 | 97 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffkv+ + ++r+++p kfa+++ k ++ +++l+ +g + +v + +++++ vl++GW+ F + ++++ D +vF+++g+ f++ v v Pahal.I02533.10 8 FFKVM---MGDFRSRMTIPDKFAQRFRDKIRG--KIKLKVYNGSTCTVVV--ARHRNKLVLEAGWEAFISTHDIRLADLLVFRYNGN--FQFEVLV 94 67777...5556678********999766444..79999999********..*******************************9885..5558888 PP E-S CS B3 97 frk 99 f+ Pahal.I02533.10 95 FDP 97 875 PP | |||||||
2 | B3 | 49.5 | 7.5e-16 | 233 | 310 | 22 | 98 |
H.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 22 faeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 f++++ ++ + es+ l+l+ ++g++W+v l+ k++++ + +GWkeFv++n+L+ gD+++F+l ++ + ++++++r Pahal.I02533.10 233 FCRKYanQYLPSESQILRLQ-QHGKVWQVLLR-ATKRNSIRFCRGWKEFVSDNRLQIGDICLFELLKNeKMLAMNIHIIR 310 55555554445566667755.6*********5.44445688999********************9988788888888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.08E-21 | 2 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.8E-21 | 3 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.011 | 5 | 98 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.10E-17 | 6 | 96 | No hit | No description |
Pfam | PF02362 | 2.5E-12 | 8 | 96 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-8 | 8 | 98 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.41E-19 | 210 | 309 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-22 | 210 | 310 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.68E-17 | 213 | 307 | No hit | No description |
SMART | SM01019 | 5.6E-4 | 214 | 310 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.605 | 216 | 311 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-14 | 231 | 311 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MDDRCKYFFK VMMGDFRSRM TIPDKFAQRF RDKIRGKIKL KVYNGSTCTV VVARHRNKLV 60 LEAGWEAFIS THDIRLADLL VFRYNGNFQF EVLVFDPSCC VKESSNVAQN CCDHVQVQQR 120 HRDLLDISSD SGDDQEPMQS SGSEDPTPAE KKGPNQSTKK TNTSSLTCHL NAPENDQEIS 180 SMTSYIFSPF THLTQKQRMK VEKRVQDICS SIPIFGSVMT KCNITRNPRY LGFCRKYANQ 240 YLPSESQILR LQQHGKVWQV LLRATKRNSI RFCRGWKEFV SDNRLQIGDI CLFELLKNEK 300 MLAMNIHIIR K* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796319.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X2 | ||||
TrEMBL | A0A2S3IK50 | 0.0 | A0A2S3IK50_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01271.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-24 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I02533.10 |