PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02532.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 334aa    MW: 38086.9 Da    PI: 10.1391
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02532.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.71e-18361181199
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       ++rlvlp k a ++  k+++   + le++sg +++v++   ++sgr  l++GW++Fv+ +gLk  Df+vFk+dg s+  ++v +f+ 
  Pahal.I02532.1  36 DFHSRLVLPDKLALHFRCKTAR--SINLESPSGHTFDVQV--ARNSGRLALQSGWESFVSVHGLKMMDFLVFKYDGISR--MKVLIFDP 118
                     45678********988878767..5***************..*******************************988544..58888875 PP
2B349.67.1e-162653323499
                     SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  34 ktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +tl + +++g+sWev +++   r++++   l kGWk+F+++n+L++gD ++F+l ++++ +++v+++r+
  Pahal.I02532.1 265 RTL-MLHRHGKSWEVMCRIqvrRGHRNFQNLCKGWKRFARDNNLRVGDLCLFELLKTKNYTMNVHIVRE 332
                     344.5778*********997766666668899***********************99********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-2123121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-2124126IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.35126119IPR003340B3 DNA binding domain
CDDcd100171.60E-1827117No hitNo description
SMARTSM010194.9E-1129119IPR003340B3 DNA binding domain
PfamPF023625.4E-1630117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-21228332IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-20228331IPR015300DNA-binding pseudobarrel domain
CDDcd100172.15E-16231331No hitNo description
SMARTSM010191.3E-4233333IPR003340B3 DNA binding domain
PROSITE profilePS5086312.675234333IPR003340B3 DNA binding domain
PfamPF023623.3E-14238332IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MRKPGKGCKE RGACHFWNDY DTDDQDKHFF KVLVGDFHSR LVLPDKLALH FRCKTARSIN  60
LESPSGHTFD VQVARNSGRL ALQSGWESFV SVHGLKMMDF LVFKYDGISR MKVLIFDPSG  120
CEKVPPCFVT KNAISARQMK EESIDISSNC ANLPMKTPEA RRKAWKQRDG RKIANISSSC  180
SPSKSSGDSK SSEEHESHSV PSYILPRCTS LTNVQKKQLK EKVGAICSEI PIYVCVMKKS  240
NVSTIHQSMR FSGAYSEAYL PFEGRTLMLH RHGKSWEVMC RIQVRRGHRN FQNLCKGWKR  300
FARDNNLRVG DLCLFELLKT KNYTMNVHIV REK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679254.11e-178putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLA0A2S3IKM70.0A0A2S3IKM7_9POAL; Uncharacterized protein
STRINGPavir.Ia01199.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-22B3 family protein