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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I02531.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 251aa MW: 28741.1 Da PI: 9.5623 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.7 | 1.2e-19 | 27 | 115 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkvl + + rl +p kf++++ g kt++le+++g +++v++ k+ +++vl++GWk F+ a++Lk Df+vFk+dg+ + +v Pahal.I02531.6 27 FFKVL--AGD-FRERLGIPDKFVQHIRGR--IAKTVKLESRTGCTFDVEV--AKSLDKVVLQTGWKAFACAHDLKMWDFLVFKYDGTPRL--KVL 112 66666..444.4567********888777..6679***************..********************************985555..888 PP EE- CS B3 96 vfr 98 +f+ Pahal.I02531.6 113 IFD 115 886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-21 | 21 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.462 | 24 | 117 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.65E-21 | 25 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.06E-21 | 25 | 115 | No hit | No description |
Pfam | PF02362 | 2.0E-16 | 27 | 115 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.1E-9 | 27 | 117 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MRKPGKRCKE TDAHYYWNRS DEHDRYFFKV LAGDFRERLG IPDKFVQHIR GRIAKTVKLE 60 SRTGCTFDVE VAKSLDKVVL QTGWKAFACA HDLKMWDFLV FKYDGTPRLK VLIFDLSCCE 120 KVLPCHTRDR GEGEEQIENS RSCDDFPMKS PGNKRKAWKQ REGCMNANTS STSLSDSSGG 180 SMSPEDQKSH SVPSYILPRR TFLTFELKKK LKEKVRAICS KTPIYGCVMK KTSIEGKPQT 240 MVSQETLFLD * |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796557.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
TrEMBL | A0A2S3IK24 | 0.0 | A0A2S3IK24_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01270.1.p | 1e-146 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-14 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I02531.6 |