PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02528.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 277aa    MW: 31776.7 Da    PI: 10.4157
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02528.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.51.4e-19291081499
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +++++pkkf+++ +gk ++  t++le++ g s++v++   +++g++ l+ GW+ Fv++++L  gDf+vFk+d+rs    +v +f++
  Pahal.I02528.1  29 RIMTIPKKFVQRLMGKVTG--TIKLESRAGSSFDVQV--INNQGKVSLGFGWEAFVSSHDLSMGDFLVFKYDRRSHL--KVLIFDS 108
                     579*******999877555..8***************..99999***************************997777..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100173.36E-1725107No hitNo description
SuperFamilySSF1019361.67E-1925111IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-1127109IPR003340B3 DNA binding domain
PfamPF023629.5E-1730108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-2031120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.39331109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-5199262IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSKKRESCKE RDIFFDWKHK IDQDKHFFRI MTIPKKFVQR LMGKVTGTIK LESRAGSSFD  60
VQVINNQGKV SLGFGWEAFV SSHDLSMGDF LVFKYDRRSH LKVLIFDSSV CEKLSSVVMD  120
TDHKSQRKEP VGMPSPYRDI SMKSSPSANK AWEQQDSSNQ GHNVIDISSS SSLQRSSVHL  180
NMRYLTSTQK QKVKEKVRAI HSEIPIHVCV MTKSNVYGRS RCMNFSRQYA DAYLRFEKKE  240
LMLQCNGKIW VVPCSKVGRH IRLLEAVGIR QQFAIG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6TLE31e-164A0A3L6TLE3_PANMI; Uncharacterized protein
STRINGPavir.Ia01267.1.p1e-155(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-12B3 family protein