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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.I02445.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
MYB_related |
Protein Properties |
Length: 327aa MW: 35955.8 Da PI: 8.6998 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.I02445.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 31 | 5.8e-10 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
++rWT eE+ l +++++G g W+tI + R+ ++k++w++
Pahal.I02445.1 5 KQRWTSEEEAALRAGIARHGVGKWRTILKDPDfsstlCYRSNVDLKDKWRN 55
79****************************999999978**********99 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 327 aa
Download sequence Send
to blast |
MGAPKQRWTS EEEAALRAGI ARHGVGKWRT ILKDPDFSST LCYRSNVDLK DKWRNMNVIV 60 STSSSRDKGK AAVKKIRTTP KNNEHTTAIS IVTSDIDDEI VDDKPVASVP SEAQNASNPK 120 KSHSRLDNII MEAIKSLNEP TGSHRTTIAN YIEEQYWPPS DFDHLLSAKL KDLATIGKLI 180 KVNRKYRIAP SSPNLEGRSP KMLLLEDLQR EPIKMGNNDS KTLTRSQVDA ELARMATMTA 240 EEASAAAARA VAEAEAIMAE AEAAAREAEA AEADAQAAQA FAEAAFLTLK NRNAAKLVIV 300 LVHRSLCYMS YCPFTCRARF HNPFCN*
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Functional Description ? help
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Source |
Description |
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT062059 | 0.0 | BT062059.1 Zea mays full-length cDNA clone ZM_BFb0211A14 mRNA, complete cds. |