 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.I02392.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
YABBY |
| Protein Properties |
Length: 197aa MW: 21857 Da PI: 9.5205 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.I02392.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 236.6 | 5.4e-73 | 12 | 170 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100
++e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCt llsvnl+ q l++++h + ++e+ kv++ ++++n +++ + ++ ++ +
Pahal.I02392.1 12 APEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTGLLSVNLRGLIQSLPVQNH-----SQLVQENFKVHNISFTENLSEYAPSPSKYRMPM 101
79******************************************************9.....566999****************99999999988 PP
YABBY 101 l.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
+ s++ d++ ++ ++ PekrqrvPsaynrfikeei+rikasnP ishreafs+aaknWahfP+ihfgl
Pahal.I02392.1 102 MfSTKGDQD--HMLHIRAAPEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPNIHFGL 170
764443333..34457779**************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 197 aa
Download sequence Send
to blast |
MSAQIAPAPA PAPEHVCYVH CNFCNTILAV SVPSNSMLNI VTVRCGHCTG LLSVNLRGLI 60
QSLPVQNHSQ LVQENFKVHN ISFTENLSEY APSPSKYRMP MMFSTKGDQD HMLHIRAAPE 120
KRQRVPSAYN RFIKEEIRRI KASNPAISHR EAFSTAAKNW AHFPNIHFGL GTHESSKKLD 180
EAIGAAGRPQ KVQDLY*
|
