PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I02374.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 119aa MW: 13581.6 Da PI: 5.508 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 59 | 1e-18 | 5 | 59 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k lrW+ +LH Fv+ v+ G ++ + k+++e+m+v gLt++++kSHLQ+YR Pahal.I02374.1 5 KSHLRWSDDLHMIFVKTVAYQGEAKPTALKEMMEAMGVRGLTIQNIKSHLQRYRE 59 5689*****************88888889*************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.88E-11 | 2 | 61 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-19 | 3 | 60 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-14 | 5 | 60 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MQPAKSHLRW SDDLHMIFVK TVAYQGEAKP TALKEMMEAM GVRGLTIQNI KSHLQRYREK 60 CELGAEAPAV EIMNNFLMDD IELTVIDEYI ADLANYAFGH LWFHSQDMSL LSHLSERV* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797593.1 | 3e-48 | myb family transcription factor PHL12-like | ||||
Refseq | XP_025797594.1 | 3e-48 | myb family transcription factor PHL12-like | ||||
TrEMBL | A0A3L6SBR9 | 7e-64 | A0A3L6SBR9_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ia01117.1.p | 7e-62 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15499 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.1 | 9e-12 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I02374.1 |