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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I02354.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 135aa MW: 14197.7 Da PI: 9.6444 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 72.4 | 5.8e-23 | 46 | 103 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTT.EEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpk.vveitYegeHnh 58 +Dgy+W+KYGqK +k+ + rsY+rC ++ C +kkkve +dp+ ++ ++Yeg H+h Pahal.I02354.3 46 EDGYEWKKYGQKFIKNIQKIRSYFRCRHRLCGAKKKVEWHPSDPSgALRVVYEGAHQH 103 7******************************************985789********* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-24 | 40 | 106 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.647 | 40 | 106 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-21 | 41 | 106 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.8E-25 | 45 | 105 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.5E-21 | 46 | 103 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MASSSSSQPN AIGSAGDRNQ EKEDEAVVAA AAAAAAGNGS QLVMPEDGYE WKKYGQKFIK 60 NIQKIRSYFR CRHRLCGAKK KVEWHPSDPS GALRVVYEGA HQHGSPPSSS AAAAGGASNK 120 YELGAQYFGG ARPQ* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970633 | 3e-84 | EU970633.1 Zea mays clone 348246 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791517.1 | 7e-69 | WRKY transcription factor 23-like isoform X3 | ||||
TrEMBL | A0A3L6S831 | 1e-76 | A0A3L6S831_PANMI; Putative WRKY transcription factor 33 | ||||
STRING | Si038001m | 2e-60 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 2e-14 | WRKY DNA-binding protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I02354.3 |