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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.I02348.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
LBD |
Protein Properties |
Length: 200aa MW: 20656.3 Da PI: 7.8241 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.I02348.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 141.2 | 3.2e-44 | 29 | 128 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
+CaaCk+lrr+Ca++Cv+apyfp +p+kfanvhk+FGasnv+kll+++p ++r da+sslvyeA+ar+rdPvyG+vg i++lqqq+e l+a+la
Pahal.I02348.1 29 PCAACKLLRRRCAASCVFAPYFPPGEPHKFANVHKVFGASNVSKLLQEIPAQHRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQVEALQAQLA 123
7********************************************************************************************** PP
DUF260 96 llkee 100
l+++e
Pahal.I02348.1 124 LAQAE 128
99976 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 200 aa
Download sequence Send
to blast |
MRDEVAVATP GGGRAGGGGG GGAASAPAPC AACKLLRRRC AASCVFAPYF PPGEPHKFAN 60 VHKVFGASNV SKLLQEIPAQ HRGDAVSSLV YEANARVRDP VYGCVGAISS LQQQVEALQA 120 QLALAQAEVV RLKMSNDYIV HRLKAARGGG GGGSSYAGSP SSMSSPKTAE PEAHCKATPE 180 LLDMVVDQPD MDDAQFWSY*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT069911 | 0.0 | BT069911.1 Zea mays full-length cDNA clone ZM_BFb0321D10 mRNA, complete cds. |
GenBank | KJ727650 | 0.0 | KJ727650.1 Zea mays clone pUT5577 LOB transcription factor (LOB19) mRNA, partial cds. |