PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02270.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 330aa    MW: 36223.7 Da    PI: 6.2692
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.1e-092442772255
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      +yps+ e++ LA+++gL+ +q+ +WF N+R ++
  Pahal.I02270.1 244 WPYPSELEKAALAESTGLDAKQINNWFINQRKRH 277
                     59*****************************885 PP
2ELK36.11.4e-12197218122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK++Ll+KYsgyL+sL++E+s
  Pahal.I02270.1 197 ELKNRLLNKYSGYLSSLWKELS 218
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.5E-2060104IPR005540KNOX1
PfamPF037907.9E-2162102IPR005540KNOX1
SMARTSM012561.6E-28108159IPR005541KNOX2
PfamPF037914.4E-22114157IPR005541KNOX2
SMARTSM011881.1E-6197218IPR005539ELK domain
PROSITE profilePS5121310.545197217IPR005539ELK domain
PfamPF037891.5E-9197218IPR005539ELK domain
PROSITE profilePS5007112.471217280IPR001356Homeobox domain
SuperFamilySSF466893.42E-18219288IPR009057Homeodomain-like
SMARTSM003891.5E-11219284IPR001356Homeobox domain
CDDcd000861.12E-12220280No hitNo description
Gene3DG3DSA:1.10.10.601.3E-25222281IPR009057Homeodomain-like
PfamPF059207.1E-16237276IPR008422Homeobox KN domain
PROSITE patternPS000270255278IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEQLPVLASG SKASTTTTPF YLALDHRASA SSSPPAEAPT PPPPAVSDPP GQSNSERGSE  60
IIKAKIMSHP LYPALLRAFI DCRKVGAPPE VVGRLSALAG EVEMNSGDVQ EQPADPELDQ  120
FMEIYCHMLV RYRQELTRPI QEADEFFRSM EAQIDSFSLD DNGYEGGGST DDDGQETVDL  180
VGLPVAEIGS PSGEDRELKN RLLNKYSGYL SSLWKELSRK KKKGKLPRDA RQKLLHWWQL  240
HYRWPYPSEL EKAALAESTG LDAKQINNWF INQRKRHWKP APPAMVLATD YRLRPYGGGA  300
GASSSSSALA AFRAEGQYFA GGSSYPRGP*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0406220.0BT040622.1 Zea mays full-length cDNA clone ZM_BFc0104L02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792019.10.0homeobox protein knotted-1-like 4
SwissprotQ75LX71e-141KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLA0A2S3IJG10.0A0A2S3IJG1_9POAL; Uncharacterized protein
TrEMBLA0A2T7C3080.0A0A2T7C308_9POAL; Uncharacterized protein
STRINGSi036580m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-75KNOTTED-like from Arabidopsis thaliana