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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.I02010.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
LBD |
Protein Properties |
Length: 219aa MW: 23414.8 Da PI: 10.0697 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.I02010.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 102 | 5.2e-32 | 32 | 132 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94
aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka +e r++a+++l++eA++r rdP +G+++ ++ l+++ + l+ae
Pahal.I02010.1 32 ACAVCKHQRRKCEPNCELAAYFPAHRMNDFRALHLVFGVANLTKLIKANATEAaRRRAAETLTWEARWRERDPSEGCYREVSCLRRDNAVLRAEN 126
7**********************************************9977766****************************************9 PP
DUF260 95 allkee 100
a+l+++
Pahal.I02010.1 127 AALRRQ 132
999887 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 219 aa
Download sequence Send
to blast |
MYMPLALVVP YMHVHAYRGR TTGMTGGGSG GACAVCKHQR RKCEPNCELA AYFPAHRMND 60 FRALHLVFGV ANLTKLIKAN ATEAARRRAA ETLTWEARWR ERDPSEGCYR EVSCLRRDNA 120 VLRAENAALR RQLAEQQQLL LWSRAAAAAA AAPTANSNMA GGCYNGNASG NGLVVAVRPP 180 PHAPAAPAAQ TMLGYRSVPV CPPTPNGRKS APDAPPSP*
|
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU973222 | 1e-154 | EU973222.1 Zea mays clone 395148 ramosa 2 mRNA, complete cds. |