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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.I01943.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
GRAS |
Protein Properties |
Length: 570aa MW: 61622.9 Da PI: 5.7021 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.I01943.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 350 | 3.7e-107 | 192 | 561 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97
+ Ll+c + + d +la L +++ as dgdp +R+a+yf+ ALa+rla + ++ ++s++++ s+e + +k++++++P+ kf+hlt
Pahal.I01943.1 192 QSLLACSRTAA-ADPALAAVELVKVRAAASDDGDPAERVAFYFADALARRLAC---GGGAQTSTSSDDRFASDELTLCYKTLNDACPYSKFAHLT 282
67999999655.588999999999****************************8...22222333444444599999******************* PP
GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
aNqaIlea+ +++++Hi+Df+i qG+QW+aLlqaLa+Rpeg+p ++Ri gv sp g + +l +t rL++fA+ lgv+fef + + +++++l
Pahal.I01943.1 283 ANQAILEATGTATKIHIVDFGIVQGIQWAALLQALATRPEGKPsRVRISGVPSPYLGqkPAASLAATSARLRDFAKLLGVDFEFVP-LLRQVHEL 376
***************************************887769********9988888999***********************.599***** PP
GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
+ ++++v+p+Ea+aVn++lql++ll ++++++ ++vL+l kslsP vv++ e e+++n++ F++rf++al yy +f+sl++ ++r+s er+
Pahal.I01943.1 377 DRSDFSVEPDEAVAVNFMLQLYHLL---GDSDEPVRRVLRLAKSLSPSVVTLGEYEVSLNRAGFVDRFANALCYYKPVFESLDVAMARDSPERVR 468
*************************...66666777*********************************************************** PP
GRAS 285 vErellgreivnvva.cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
vEr ++g++i+ +v egaer+ r+ ++W+ +e +GF+pv+ls++a +qa+ ll +++ + y++ e +++ l W++rpL++vSaWr
Pahal.I01943.1 469 VERCMFGERIRRAVGpEEGAERTDRMAASMEWQTLMEWCGFEPVKLSNYARSQADFLLWNYDaKYKYSLVELPPAFLsLAWEKRPLLTVSAWR 561
**************8356899*****************************************88889999*9999988**************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 570 aa
Download sequence Send
to blast |
MAYMCADSGN LMAIAQQVIQ QQQQQQQQHQ RHHHHHHHHL PPPPMQLPPR QAPPMPPAPA 60 PPHGQIPATA LPYGGGAWPH SEHFFSDSFV GASAADAVFS DLAAAADFDS DVWMDSLIGD 120 PPFADSDLDR LIFTTPPPPV PVPAPAAAPV DVAAQPGAAA PAPLPQTAAV AAPAACSSPS 180 SLDVSCSEPV LQSLLACSRT AAADPALAAV ELVKVRAAAS DDGDPAERVA FYFADALARR 240 LACGGGAQTS TSSDDRFASD ELTLCYKTLN DACPYSKFAH LTANQAILEA TGTATKIHIV 300 DFGIVQGIQW AALLQALATR PEGKPSRVRI SGVPSPYLGQ KPAASLAATS ARLRDFAKLL 360 GVDFEFVPLL RQVHELDRSD FSVEPDEAVA VNFMLQLYHL LGDSDEPVRR VLRLAKSLSP 420 SVVTLGEYEV SLNRAGFVDR FANALCYYKP VFESLDVAMA RDSPERVRVE RCMFGERIRR 480 AVGPEEGAER TDRMAASMEW QTLMEWCGFE PVKLSNYARS QADFLLWNYD AKYKYSLVEL 540 PPAFLSLAWE KRPLLTVSAW RAKITTRSS*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727018 | 0.0 | KJ727018.1 Zea mays clone pUT3999 GRAS transcription factor (GRAS55) gene, partial cds. |