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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I01892.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRF | ||||||||
Protein Properties | Length: 591aa MW: 61656.8 Da PI: 7.0543 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.8 | 9.2e-24 | 212 | 255 | 2 | 45 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Pahal.I01892.1 212 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 255 69***************************************986 PP | |||||||
2 | QLQ | 58.1 | 2.7e-20 | 144 | 180 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyLaan P+P+ Ll++i++ Pahal.I01892.1 144 GPFTPSQWIELEHQALIYKYLAANSPIPHSLLVPIRR 180 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.6E-11 | 144 | 180 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.914 | 145 | 180 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.4E-14 | 145 | 179 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.65 | 211 | 255 | IPR014977 | WRC domain |
Pfam | PF08879 | 5.0E-20 | 213 | 254 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MELGGVVMDA GGGAAELGLL GGGSSRLLKH GRGNAAAGAE EHGWGGRAVK QARTAADVAE 60 AAKAAVTPFL LGSCSPGHGG EQMLSFSSVA ASSCASTASV AAAAAAVAAD GAMPLYYGTP 120 ASCSGLSSVS LSSSMQGAMA RVRGPFTPSQ WIELEHQALI YKYLAANSPI PHSLLVPIRR 180 SIASSPYPPS YFGTSTLGWG SFQLGYSGNA DLEPGRCRRT DGKKWRCSRD AVADQKYCER 240 HMNRGRHRSR KHVEGQPGHA AKAMSAAVAA AAATQPTALA ASGAGATAAG LTVSQHQQPV 300 KSYAAGATDP CSLQYNRELV NKQNESDNMQ DSDNLSMLTS MSTRNPASLF PFSKQNNPFE 360 VTSSRPEFGL VSSDSLMSSP HSSLENVNLL SSQSLNENQS SASLQHFVDW PRTPAQGGLS 420 WADAEDMQAP RSQLSISAPM ASSELSSAST SPIHEKLMLS PLKLSREYSP IGLSITASRD 480 EVSQLEANWA TMFRDSSMGG PLGEVLTKNG NAEAKNCLSA PLNLLTDFWD SSPGMESSPV 540 GVLQKTTFGS VSSSTGSSPR MENHGAYDGI SNLRDDLGSI VVNHPSIRLL * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795429.1 | 0.0 | growth-regulating factor 6-like | ||||
Swissprot | Q6AWY3 | 0.0 | GRF6_ORYSJ; Growth-regulating factor 6 | ||||
TrEMBL | A0A2S3IIH7 | 0.0 | A0A2S3IIH7_9POAL; Uncharacterized protein | ||||
STRING | Si034822m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4290 | 35 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 2e-48 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I01892.1 |
Publications ? help Back to Top | |||
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