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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I01677.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 24391.8 Da PI: 4.8161 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.7e-18 | 55 | 104 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Pahal.I01677.1 55 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 104 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.1E-32 | 55 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-21 | 55 | 113 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.0E-37 | 55 | 118 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.958 | 55 | 112 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-12 | 55 | 104 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.30E-31 | 56 | 114 | No hit | No description |
PRINTS | PR00367 | 1.4E-10 | 56 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 78 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MAMEDSSSCS EPTTSSSAEA PASPSATTAC SSSDSSSSPG KGTKRRRSKD GHHPTYRGVR 60 MRAWGKWVSE IREPRKKSRI WLGTFATAEM AARAHDVAAL AIKGRAAHLN FPELAGELPR 120 PATAAPKDVQ AAAALAAAAN FPAPGANADG AGRADPDDDG PDASASPPQP QETDGNPDDA 180 LFDLPDLLFD LGRHGPSSCQ LSCAASWDDD VCFPGAGASF RLEEPPPLLW DYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 53 | 112 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728262 | 1e-137 | KJ728262.1 Zea mays clone pUT6539 AP2-EREBP transcription factor (EREB176) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827814.1 | 1e-167 | ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q8LBQ7 | 1e-51 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A2S3GRS8 | 1e-165 | A0A2S3GRS8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00834.1.p | 8e-95 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 3e-40 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I01677.1 |
Publications ? help Back to Top | |||
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