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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I01674.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 303aa MW: 31206.3 Da PI: 5.0698 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.8e-17 | 88 | 137 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Pahal.I01674.1 88 TFRGVRMRV-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 137 59****999.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-31 | 88 | 146 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-20 | 88 | 146 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.813 | 88 | 145 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-37 | 88 | 151 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-10 | 89 | 100 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-11 | 89 | 137 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.57E-29 | 89 | 147 | No hit | No description |
PRINTS | PR00367 | 7.8E-10 | 111 | 127 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MEADAIHGPT TSSSSDGDSG AGSCVINGAQ ELPSTNGRQH KHVKRKRATS PPAAPGGRRA 60 PEAAVDEEGS GGGAGRRKRG SAGTRHPTFR GVRMRVWGKW VSEIREPRKK SRIWLGTFPT 120 AEMAARAHDV AALAIKGRAA HLNFPHLAHE LPRPASTAPA DIQAAAAMAA AAADVEQCVS 180 SHADETSSSS AASSEKVATA AKAAAAAITA DVEQCESSPA AETSSSSAAS SVEAAAGHTE 240 ENVLFDLPDL LLDLSDGLWS PIWAAAPAAA EEYDGDSLHE PLLWADDDDQ CWMDAAAPVQ 300 PD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-18 | 82 | 146 | 8 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812680.1 | 0.0 | ethylene-responsive transcription factor ERF038-like | ||||
TrEMBL | A0A2S3GS09 | 0.0 | A0A2S3GS09_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00832.1.p | 1e-127 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 5e-39 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I01674.1 |