PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01652.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 321aa    MW: 33020.5 Da    PI: 7.118
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01652.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1048e-33145202259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+ dp+vv++tYeg+H h+
  Pahal.I01652.1 145 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSADPSVVITTYEGQHCHH 202
                     8******************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-33129202IPR003657WRKY domain
SuperFamilySSF1182903.53E-28136203IPR003657WRKY domain
PROSITE profilePS5081130.021139204IPR003657WRKY domain
SMARTSM007742.4E-38144203IPR003657WRKY domain
PfamPF031061.1E-25145202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAGAAGDGTE GVGGEWPFAG ADAFGEYSSV FAELGWPGGL AAGAGELPVL DLPEAAVAAP  60
AEATRPVVEV VAPARSGDAA ASSSSSGDGD GDGDGDGAAP GSHDRKPAAS AGTASTNPAA  120
ARKGQKRARQ PRFAFMTKSE IDHLEDGYRW RKYGQKAVKN SPFPRSYYRC TNSKCTVKKR  180
VERSSADPSV VITTYEGQHC HHIGSFQRGG VGAAAAHIHH SATAVALAEQ MSSFIPPRQL  240
YGLPPLHPQS SPSSETVVSP TSTSLQQLNG GGDELRQTSF SPRVSMVRSS PPTPSSVPPA  300
ISVEKAGLLD DMVPHGVRHG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-26135203876Probable WRKY transcription factor 4
2lex_A6e-26135203876Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586080.0KU058608.1 UNVERIFIED: Panicum miliaceum WRKY8-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798563.10.0probable WRKY transcription factor 57
TrEMBLA0A2S3II180.0A0A2S3II18_9POAL; Uncharacterized protein
STRINGPavir.J37837.1.p1e-155(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.23e-46WRKY DNA-binding protein 57