PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01605.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 350aa    MW: 37698.6 Da    PI: 6.4452
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01605.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.8e-112753151055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     rrRR+riN+++  L++l+P+      +K++ +++Le+Av+Y++ Lq
  Pahal.I01605.1 275 RRRRERINERLKILQKLVPNG-----TKVDISTMLEEAVHYVRFLQ 315
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.193265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-15267331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-14270328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-13271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-8275315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.63E-4281319No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSQPELAAWL ESRDAHWCSQ YPAAPAPDEE SEIVAQFLAA PYPYPNDDDD DEREQKHQHH  60
NKLGEISATS STYWPEPGHV TDPGNGACYW PPHGAASNRN SSGSGAYFDG SGCCYYYLAE  120
PDVSLGINTR TTLLCTSSID LNLLGDGEEE GTSSVVHPAP NPSPADHTHT AGHRNGGDDG  180
AAARAAVSLP KRKALAGNDG GDLGRHKKKE KKAASKTAQK FSQESSQSKG SCSADESLSN  240
CSEVNRRLGA HGGGGNAKAR AAKGSATDPQ SLYARRRRER INERLKILQK LVPNGTKVDI  300
STMLEEAVHY VRFLQQQIKM LSSDEMWMYA PIAYNGMSLG IDLKISTLQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190211KRKALAGNDGGDLGRHKKKEKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1847711e-48KF184771.1 Saccharum hybrid cultivar R570 clone BAC 029M13 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796889.10.0transcription factor bHLH85-like
TrEMBLA0A2S3IHT20.0A0A2S3IHT2_9POAL; Uncharacterized protein
STRINGPavir.J00626.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144452123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.17e-35bHLH family protein