PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01602.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 332aa    MW: 35970.2 Da    PI: 10.7406
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01602.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.61.4e-28220271152
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                     k+r++W+peLH++Fv a++qLGG+++AtPk+i+e+m+v+gLt+++vkSHLQk
  Pahal.I01602.2 220 KARRCWSPELHRQFVAALHQLGGPQVATPKQIREVMQVDGLTNDEVKSHLQK 271
                     68*************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.176217277IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-24218271IPR009057Homeodomain-like
SuperFamilySSF466898.96E-14218273IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-22220272IPR006447Myb domain, plants
PfamPF002491.3E-6222271IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGLDVAEIGM GLDLGLDLRL FAARSAGGMA AAAAKGAPAG IEACIRSLEE ERRKIEVFRR  60
ELPLCVRLLA DVIEELKEEA ARKGSDLELR PDDGDKRKWM STAQLWVDSD AKSKSEKEQR  120
NAMTSPEPKL LGGPMPIRAV PAVPPPPPPC FRRDDNAAGT VGLPGLSLLP PAAKTSISPV  180
PAVDEHRQNA AARLSATMSP SGPGLNLHAQ TQQQQQQARK ARRCWSPELH RQFVAALHQL  240
GGPQVATPKQ IREVMQVDGL TNDEVKSHLQ KIARRGSGEP VDSAGGWPLG FSGAKQLTVR  300
VSSGPPSVLW VRGGRLCSHR RRRQQQQQRR R*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792667.11e-146transcription factor HHO5-like
TrEMBLA0A2S3IIE90.0A0A2S3IIE9_9POAL; Uncharacterized protein
STRINGPavir.Ia00346.1.p1e-144(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-22G2-like family protein