PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I01600.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 369aa MW: 37463.4 Da PI: 9.286

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I01600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.6	5.8e-38	78	135	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ l+cprC+s+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk + Pahal.I01600.1 78 QAPLRCPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPRP 135 66789**************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	9.1E-32	80	134	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.096	81	135	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-27	81	132	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	83	119	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MIQELLGGAA MDQQLKSMND GNPASLPLLL HPIVSNPSPT SSSSTSSRSS AQQQRSTSAT 60 SSPQGQGQGQ QQGQGAEQAP LRCPRCNSSN TKFCYYNNYN LTQPRHFCKT CRRYWTKGGA 120 LRNVPIGGGC RKPRPMPTPA KPAVSCKSMG GAPSLGLGVG LGMGAGPAPW ASSQQAAAAQ 180 LMALLNSARG VQGGHGGSNM HRLLGLDTMP HLPLHVLPGG GNAGGAPASL WPPAAPRPIP 240 TPPLMDSQIG MGALGQHDVL SSLGLKLPPP SSSPAASYYS DQLHAVVSSA AGRPHEYDGP 300 GATSLPCTTA ATSLPPAASG VSAALSSATV GLDLPPVSLP APEMQYWAGP AAMSVAWPDL 360 PTPNGAFP*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MIQELLGGAA MDQQLKSMND GNPASLPLLL HPIVSNPSPT SSSSTSSRSS AQQQRSTSAT  60
SSPQGQGQGQ QQGQGAEQAP LRCPRCNSSN TKFCYYNNYN LTQPRHFCKT CRRYWTKGGA  120
LRNVPIGGGC RKPRPMPTPA KPAVSCKSMG GAPSLGLGVG LGMGAGPAPW ASSQQAAAAQ  180
LMALLNSARG VQGGHGGSNM HRLLGLDTMP HLPLHVLPGG GNAGGAPASL WPPAAPRPIP  240
TPPLMDSQIG MGALGQHDVL SSLGLKLPPP SSSPAASYYS DQLHAVVSSA AGRPHEYDGP  300
GATSLPCTTA ATSLPPAASG VSAALSSATV GLDLPPVSLP APEMQYWAGP AAMSVAWPDL  360
PTPNGAFP*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ726976	0.0	KJ726976.1 Zea mays clone pUT3677 C2C2-DOF transcription factor (DOF25) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796814.1	0.0	dof zinc finger protein 4-like
TrEMBL	A0A2T7C0L6	0.0	A0A2T7C0L6_9POAL; Uncharacterized protein
STRING	Pavir.Ia00348.1.p	1e-178	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7710	31	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	3e-32	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Pahal.I01600.1