PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01408.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 398aa    MW: 42047.8 Da    PI: 9.3488
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01408.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.3e-30324382259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D y+WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ver+++d+ ++++tYe++Hnh 
  Pahal.I01408.1 324 ADNYSWRKYGQKPIKGSPHPRGYYRCSSKkDCPARKHVERCRSDGGMLIVTYENDHNHA 382
                     69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.9E-13287321IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.9E-33311384IPR003657WRKY domain
PROSITE profilePS5081130.412318384IPR003657WRKY domain
SuperFamilySSF1182901.57E-26319384IPR003657WRKY domain
SMARTSM007746.9E-36323383IPR003657WRKY domain
PfamPF031061.4E-25325381IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEVVEEANGA AVESCKKLVA FLSLSAGDAF RPMPVAAETD EAVARFGKVV AVLSDRLGHA  60
RARIGSKSSP ALPVDASCLL DHPSLAPGHS PNGRHLVSSI PAPAPSAATM RSVAPMRGHE  120
TEVAPAVLVS PCANVAPAPA AARKFDRNMF LETPLLELNS CGVLPSTPMA AAQKNTSTVV  180
TAPSPNPCTT IASHIQFQPQ QQQAKKQKSF QFDQAPRGEQ FHIEVPVPLP RGGGGGAKEV  240
ISFSFDNNSV CTSSAATSFF TSISSQLISM SDAATSSAAT AKKACAKRGE DGSVKCHCPK  300
KKKPREKRVV RVPAISDKNA DIPADNYSWR KYGQKPIKGS PHPRGYYRCS SKKDCPARKH  360
VERCRSDGGM LIVTYENDHN HAQPLDPSVL PANAAEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-193213841274WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432520.0AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796685.10.0protein WRKY1-like
TrEMBLA0A2S3IH680.0A0A2S3IH68_9POAL; Uncharacterized protein
STRINGPavir.J06035.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.17e-36WRKY DNA-binding protein 7