PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I01275.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 298aa MW: 31953.5 Da PI: 5.405

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I01275.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	24.5	7.5e-08	8	141	7	127
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgk....rknratksgy.Wkat 86 F+P+d+ L +++++ +++l ++++++d++++ P dL + + + w f+++++ k+a+gk r++ ++ +g+ W++ Pahal.I01275.1 8 FRPRDDASSI-ALLRSLRSGDVDL-SFVHRADVCSAAPADLVAnlepvpgtdlDQGGYNAIWLFYCPKRFKNAQGKpsghRQRAIAGDGTcWHSE 100 7788766553.4667788888888.88************744778887754222344589**99999655444266666666655 PP NAM 87 gkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyr 127 k+v+ + + L + g++++ ++ W+m ey Pahal.I01275.1 101 AGPKPVKGLD---GATLSNLSYGrkeGGSSRSFNRMGWCMTEYD 141 **8844...4566788887443357777889******5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	14.213	2	161	IPR003441	NAC domain
SuperFamily	SSF101941	1.26E-13	8	161	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MSAEDGSFRP RDDASSIALL RSLRSGDVDL SFVHRADVCS AAPADLVANL EPVPGTDLDQ 60 GGYNAIWLFY CPKRFKNAQG KPSGHRQRAI AGDGTCWHSE AGPKPVKGLD GATLSNLSYG 120 RKEGGSSRSF NRMGWCMTEY DDKHGGGGSG GDHVLCKIYR SSSSLAKAGK SKPPTTQRSS 180 GCKRKATGDE PQARPTKTSH KQACAGVDQE EFLLTDQQMA IPEPESLLPT EEEQFQDNTL 240 FTFQELLGGP GYGEYYGVCS PDTQFTMDEM FSRSSGSCSM PTAMAPLDAG FFEGLAF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463549.1	5e-51	uncharacterized protein LOC8079646
TrEMBL	A0A2S3IGP0	0.0	A0A2S3IGP0_9POAL; Uncharacterized protein
STRING	Pavir.J03710.1.p	1e-172	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4574	6	32

Link Out ? help Back to Top
Phytozome	Pahal.I01275.1