PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

WRKY

Protein Properties

Length: 373aa MW: 39821.6 Da PI: 6.9428

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I01072.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.1	5.7e-31	169	227	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+ Pahal.I01072.1 169 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 227 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	33.247	163	229	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.0E-30	166	229	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-26	167	229	IPR003657	WRKY domain
SMART	SM00774	4.3E-38	168	228	IPR003657	WRKY domain
Pfam	PF03106	8.2E-26	170	227	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MDMAAVAGAA AQGDLADVVA RAGAMAAPPS TSHRTPPPPS LAAAADHMSS SATMARQIMV 60 PSCSDTAMVE APSMVDPYLS SSATAPRGAY WLPPPPQLAV QIFQQHACGY ARDVAMAGAA 120 TDVDGEEAMR ISPAAHQIMK RKNEVKKVVC IPALPPTSSR PGGGEVIPSD LWAWRKYGQK 180 PIKGSPYPRG YYRCSSSKGC MARKQVERSR SDPNMLVITY TAEHNHPWPM QRNVLAGYSR 240 PHTHTSTSSC KKKNSGCTVD PTISSSSSTS KNANYYSEHN AVGNGNLEYG QQTTTDMMDE 300 GNAAAAGYVS YSIGALDEIE EGVAMHQPIQ TADHEVFAEL EELEPGSSSN PAVNANIYSR 360 QGVSFDQWRH KF*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MDMAAVAGAA AQGDLADVVA RAGAMAAPPS TSHRTPPPPS LAAAADHMSS SATMARQIMV  60
PSCSDTAMVE APSMVDPYLS SSATAPRGAY WLPPPPQLAV QIFQQHACGY ARDVAMAGAA  120
TDVDGEEAMR ISPAAHQIMK RKNEVKKVVC IPALPPTSSR PGGGEVIPSD LWAWRKYGQK  180
PIKGSPYPRG YYRCSSSKGC MARKQVERSR SDPNMLVITY TAEHNHPWPM QRNVLAGYSR  240
PHTHTSTSSC KKKNSGCTVD PTISSSSSTS KNANYYSEHN AVGNGNLEYG QQTTTDMMDE  300
GNAAAAGYVS YSIGALDEIE EGVAMHQPIQ TADHEVFAEL EELEPGSSSN PAVNANIYSR  360
QGVSFDQWRH KF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-24	142	229	2	79	Disease resistance protein RRS1
5w3x_D	2e-24	142	229	2	79	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT068753	1e-118	BT068753.1 Zea mays full-length cDNA clone ZM_BFb0381C04 mRNA, complete cds.
GenBank	EU964815	1e-118	EU964815.1 Zea mays clone 281745 WRKY transcription factor 14 mRNA, complete cds.
GenBank	KJ727613	1e-118	KJ727613.1 Zea mays clone pUT5524 WRKY transcription factor (WRKY10) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796424.1	0.0	probable WRKY transcription factor 35
Swissprot	O64747	4e-52	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A2S3IG19	0.0	A0A2S3IG19_9POAL; Uncharacterized protein
STRING	Pavir.Ia00085.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13466	28	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	5e-54	WRKY DNA-binding protein 35

Link Out ? help Back to Top
Phytozome	Pahal.I01072.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]