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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I00959.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 269aa MW: 30313.4 Da PI: 6.5203 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.4 | 9.3e-17 | 15 | 110 | 1 | 100 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk+l + + l+lp kfa++ g ++ +l+l e W+v++ + k+g ++l++GWk+F++a++L++g +vF++d+ + l+v Pahal.I00959.2 15 FFKIL--LPGMYEEALRLPAKFARDLGAR--RDLKLRLAGgEMMPLWDVEVFADEKRGDMYLGRGWKKFARAHDLRDGYLLVFRYDD-GAAALTV 104 78888..444555569*******999866..666788887555599*****99********************************87.77779** PP EEE-SS CS B3 95 kvfrks 100 +vf++s Pahal.I00959.2 105 TVFDRS 110 ***985 PP | |||||||
2 | B3 | 43.5 | 5.7e-14 | 159 | 233 | 12 | 87 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +++ l +p +f ++hg+ +++++l+ grsW+v+l+ r ++r+ ++ GW +F+ +ngL++gD++ F+++++ Pahal.I00959.2 159 QNQYLNVPVEFQDAHGYARRRQVELR---MGGRSWSVNLKRgkRVLGDRTAFKYGWHQFCVDNGLEVGDTCFFTVIRE 233 6778999********99988876666...478*******554444455599***********************8864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.6E-17 | 13 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.619 | 13 | 110 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.94E-17 | 14 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 8.7E-15 | 15 | 110 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.93E-20 | 15 | 108 | No hit | No description |
Pfam | PF02362 | 5.3E-14 | 15 | 109 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.1E-23 | 142 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.67E-15 | 144 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.50E-12 | 145 | 234 | No hit | No description |
SMART | SM01019 | 0.0089 | 146 | 240 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.547 | 148 | 263 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-11 | 159 | 233 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MEEEMAGLSL GDSEFFKILL PGMYEEALRL PAKFARDLGA RRDLKLRLAG GEMMPLWDVE 60 VFADEKRGDM YLGRGWKKFA RAHDLRDGYL LVFRYDDGAA ALTVTVFDRS TCRKQYVHAG 120 AAGGGKASRG AGAGRLSLAI AEPSHFAVSL RQCNLGTKQN QYLNVPVEFQ DAHGYARRRQ 180 VELRMGGRSW SVNLKRGKRV LGDRTAFKYG WHQFCVDNGL EVGDTCFFTV IREGACVDDD 240 DEEWEDEWED DEHVLKVEVR KKNGMMLT* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796563.1 | 0.0 | B3 domain-containing protein Os03g0212300-like | ||||
Refseq | XP_025796564.1 | 0.0 | B3 domain-containing protein Os03g0212300-like | ||||
Swissprot | Q10Q26 | 5e-89 | Y3123_ORYSJ; B3 domain-containing protein Os03g0212300 | ||||
TrEMBL | A0A2S3IT12 | 0.0 | A0A2S3IT12_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia04671.1.p | 1e-156 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 2e-16 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I00959.2 |
Publications ? help Back to Top | |||
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