PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 296aa    MW: 31616.3 Da    PI: 6.8814
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00790.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20113162255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+g
  Pahal.I00790.1 113 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDSAAFRLRG 162
                     59******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.88E-33112172No hitNo description
PROSITE profilePS5103223.604113170IPR001471AP2/ERF domain
SMARTSM003801.3E-37113176IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-23113171IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-33113171IPR001471AP2/ERF domain
PRINTSPR003672.5E-11114125IPR001471AP2/ERF domain
PfamPF008471.4E-14114162IPR001471AP2/ERF domain
PRINTSPR003672.5E-11136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MATTIDWHGR SAALPAALYE MADTKELVRA LAAPPVQHQQ PPTISFAYPC SGGVEQQRAT  60
SSLLGAGAGG LTPAQVLQVQ SQFQFLRRPA AVATQPMKRQ APAPLPARPV SKLYRGVRQR  120
HWGKWVAEIR LPRNRTRLWL GTFDTAEEAA LAYDSAAFRL RGDSARLNFP DLRRGGAHLG  180
PPLHAAVDAK LHAICNGTDV APQNQSQSQS NTTVATAATA PSTFSSASPD VKSEPGCSGS  240
ESSSSADGDV SSTGSSDVVP EMQLLDFSEA PWDESESFHL RKYPSLEIDW DSILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20111170363ATERF1
3gcc_A1e-20111170363ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795666.10.0ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A2S3ITE40.0A0A2S3ITE4_9POAL; Uncharacterized protein
STRINGGRMZM2G113060_P011e-150(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-42related to AP2 4