 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.I00766.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 315aa MW: 34347.6 Da PI: 4.599 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.I00766.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.8 | 2.2e-19 | 67 | 119 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++ eq+++Le++Fe +++++ +++ ++A+ lgL+ rqV vWFqNrRa++k
Pahal.I00766.1 67 KRRLALEQVRALERCFETDNKLDPDRKSRIARDLGLQPRQVAVWFQNRRARWK 119
4467789*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 124.9 | 3.6e-40 | 65 | 157 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrl+ eqv++LE++Fe+++kL+p+rK+++ar+LglqprqvavWFqnrRAR+ktk lE+d++aL+++++al+++ ++L++++++L++e++e
Pahal.I00766.1 65 EKKRRLALEQVRALERCFETDNKLDPDRKSRIARDLGLQPRQVAVWFQNRRARWKTKTLERDFAALRARHEALRADCDALRRDKDALAAEIRE 157
69**************************************************************************************99986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MKRQSKRPAS SHESTEEGEK LAFAEDEALK ARNTEHDEAE LDDVDDDEDE LAGGRAARST 60
CGLGEKKRRL ALEQVRALER CFETDNKLDP DRKSRIARDL GLQPRQVAVW FQNRRARWKT 120
KTLERDFAAL RARHEALRAD CDALRRDKDA LAAEIRELRQ KLSKPETAVK LEAAANDAAE 180
ERQATVGASA AALCSKDGSS DSDSSVVFND VEASPYSGAA FEQPAFAGFG APFLDTSAAT 240
TCCSSLSMFD TKWQQAPAYP YDSYKSGGGY GFTEEWLASS DVIGSGDGAA SFFSEEHASS 300
LNFGWCASGT EAWE*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JX469925 | 0.0 | JX469925.1 Zea mays subsp. mays clone UT3181 HB-type transcription factor mRNA, partial cds. |
