PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00763.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 335aa    MW: 35905.1 Da    PI: 6.4268
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00763.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.8e-14111162155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++ + + a+i+  A++Y+++L+
  Pahal.I00763.1 111 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAHRGDQASIVGGAINYVRELE 162
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.11E-14109166No hitNo description
Gene3DG3DSA:4.10.280.104.6E-14110166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-17110177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.904110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-11111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-11116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MALEAAVFSP AAAAGHFGYG RGDSPYALPW CDMGGLGDLC AGDYWDQELA DAWAAPAVWD  60
DWGEAASRDQ SSDASSDQHQ GKEAAPEPAP AVRRKRRRTK VVKNKEEIET QRMTHIAVER  120
NRRRQMNEYL AVLRSLMPPS YAHRGDQASI VGGAINYVRE LEQLLQSLEV QKSIRNRRGG  180
STDAAGSSSP FAGFFSFPQY STSPGHGCSS SSTTSLGGSS NTSNAASSDA SGGSAESGRP  240
VAVADIEVTM VEGHASLKVL ARRRPKQLLK LVAGLHQLRI PPLHLNMTTV DAMVLYTFSL  300
KVEDDSKMGS VEDIATAVHE ILGSVQRQEE TAAM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19397RKRRR
29398RKRRRT
3111122RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2034681e-178KT203468.1 Paspalum vaginatum clone Sp11 hypothetical protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796362.10.0transcription factor bHLH94-like
SwissprotQ9C7T48e-75BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2S3ITH60.0A0A2S3ITH6_9POAL; Uncharacterized protein
STRINGPavir.Ia04907.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-27bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]