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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I00706.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 326aa MW: 35207.9 Da PI: 5.4436 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.2 | 4e-18 | 100 | 149 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp + +r++lg+f tae+Aa+a++ +++l+g Pahal.I00706.1 100 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFSTAEDAARAYDVEARRLRG 149 69*******.**********72....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.1E-32 | 99 | 157 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-21 | 100 | 158 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.446 | 100 | 157 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.70E-29 | 100 | 159 | No hit | No description |
SMART | SM00380 | 9.1E-36 | 100 | 163 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.6E-11 | 100 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-11 | 101 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-11 | 123 | 139 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MCGGAILAEL IPSPRRAASK PVTAGHLWPA GSDSKKAGSG RNKRLQLADV DDFEAAFEDF 60 ADDFDEEEVE DHHFMFSSKS AFSPAHGRSA ASQKKRGRRH FRGIRQRPWG KWAAEIRDPH 120 KGTRVWLGTF STAEDAARAY DVEARRLRGS KAKVNFPAAG ARPRRGNLRA APRLQRHHAA 180 AQPALLAGEN QQEEEIAVKP EIEAAFDVGS FFDMTFPAFP AAPPAMGSSF TGSTGSESGS 240 PAKKLRYDND SSDGMSSGGG SALELADELA YDPFMVLQLP YSGGYESLDG LFAVDAAQDV 300 NGVNSDMNGF NLWSFDEFPN DSDVF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-22 | 99 | 157 | 4 | 63 | ATERF1 |
3gcc_A | 3e-22 | 99 | 157 | 4 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 98 | QKKRGRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039300 | 1e-137 | BT039300.1 Zea mays full-length cDNA clone ZM_BFc0004M21 mRNA, complete cds. | |||
GenBank | EU970244 | 1e-137 | EU970244.1 Zea mays clone 342610 root abundant factor mRNA, complete cds. | |||
GenBank | KJ726938 | 1e-137 | KJ726938.1 Zea mays clone pUT3484 AP2-EREBP transcription factor (EREB180) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791485.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
Refseq | XP_025791486.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A2S3ITL4 | 0.0 | A0A2S3ITL4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib00526.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7987 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.3 | 4e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I00706.1 |