PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00536.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 573aa    MW: 61353.8 Da    PI: 6.3486
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00536.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.3e-083423791954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +e+  LA+++gL+  qV++WF N R +
  Pahal.I00536.1 342 FEHflHPYPKDSEKLMLARQTGLSRGQVSNWFINARVR 379
                     554459******************************88 PP
2BELL1085.7e-35204275172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erq+lq+k + L+ ll++Vd++Y++y++q+q+v+ssF+avag g+a+pYt+lAl++iSrhFr+L+dai +q+
  Pahal.I00536.1 204 ERQDLQNKVSALMALLDQVDRKYRHYRNQMQIVMSSFDAVAGAGAARPYTALALQTISRHFRSLRDAIGSQV 275
                     799*****************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.3E-46135273IPR006563POX domain
PfamPF075267.1E-47141271IPR006563POX domain
PROSITE profilePS5007112.001320383IPR001356Homeobox domain
SMARTSM003891.7E-9323387IPR001356Homeobox domain
CDDcd000863.10E-12323384No hitNo description
SuperFamilySSF466894.28E-17324390IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27326389IPR009057Homeodomain-like
PfamPF059204.4E-17340379IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MATFFSASTD QRDLAGGGDM SFHHYTTSNP YSDSPTGGLM PFPATIVSEG HVAHGGDGRD  60
ESASFVNARD GPTSGAEMGL QTQLLMANAS AAQHQGLSLS LGTQGVPVSL YQYRQAGMAA  120
ASLLSPGQTT TAGRNAQSIY IQNSKYLKAA RELLDEVVNV RDAIKRKGDK NQSKDSGEGK  180
DAEKSEEKAD EHEGNSSAEL TPSERQDLQN KVSALMALLD QVDRKYRHYR NQMQIVMSSF  240
DAVAGAGAAR PYTALALQTI SRHFRSLRDA IGSQVQSLRR SLGEKDTSAQ GGGLSRLRYI  300
DQQLRQQRAM QQFGMMQQPQ HAWRPQRGLP ESAVSVLRAW LFEHFLHPYP KDSEKLMLAR  360
QTGLSRGQVS NWFINARVRL WKPMIEEMYK EEFGAEMDSH SSSENAGNKG KDEAISSEDH  420
DEFQSPSSAA KHGAAVGHLN AFKSEAIGGM DAGGVGLSGL AGGALGSYTT SLNLGAVGNG  480
SSSSSSLLQD ALAHHHGDPR FVAYGDMGGL GGGYDGGSVS LTLGLQHCND AGTVPAEQQG  540
LLYGNAGDFE FMNGSEDRQR FGPSQLLHDF VA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A1e-17329387159Homeobox protein Meis2
5bng_B1e-17329387159Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797172.10.0BEL1-like homeodomain protein 7
TrEMBLA0A2S3ITY70.0A0A2S3ITY7_9POAL; Uncharacterized protein
STRINGPavir.Ia04290.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-110BEL1-like homeodomain 6