PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

ERF

Protein Properties

Length: 128aa MW: 13725.2 Da PI: 6.9385

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I00430.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.4	2.3e-20	9	59	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrdp + r++lg+f+taeeAa+a+++a+ +++g Pahal.I00430.1 9 KYRGVRKRP-WGKFAAEIRDPERG--GSRVWLGTFDTAEEAARAYDRAAFAMKG 59 8******.******8333..4**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	4.4E-36	9	73	IPR001471	AP2/ERF domain
CDD	cd00018	7.99E-30	9	68	No hit	No description
SuperFamily	SSF54171	1.44E-23	9	68	IPR016177	DNA-binding domain
PROSITE profile	PS51032	24.46	9	67	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.4E-32	9	67	IPR001471	AP2/ERF domain
Pfam	PF00847	9.3E-15	9	59	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-12	10	21	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-12	33	49	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MEDDKKEGKY RGVRKRPWGK FAAEIRDPER GGSRVWLGTF DTAEEAARAY DRAAFAMKGA 60 TAVLNFPAGA ATMSGGGSSS SAPAAAAGAA SRGRTTRVPD SEKVELEYLD DRILEELLAE 120 DKYSKNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-30	6	113	11	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727512	1e-95	KJ727512.1 Zea mays clone pUT5371 AP2-EREBP transcription factor (EREB95) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797533.1	5e-86	ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LTC5	2e-35	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A2S3IUL6	1e-84	A0A2S3IUL6_9POAL; Uncharacterized protein
TrEMBL	A0A3L6SED7	1e-84	A0A3L6SED7_PANMI; Uncharacterized protein
STRING	Sb01g046920.1	2e-59	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04370.1	3e-23	Ethylene-responsive element binding factor 14

Link Out ? help Back to Top
Phytozome	Pahal.I00430.1

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]