PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00173.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 312aa    MW: 32590.1 Da    PI: 8.6819
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00173.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.4e-14122173155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+++  A++Y+k+L+
  Pahal.I00173.1 122 QRMTHIAVERNRRRLMNDHLASLRSLIPSS---YIPRGDQATVVGGAIDYVKQLE 173
                     79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-15113181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-14120176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.15E-13120174No hitNo description
PROSITE profilePS5088815.154121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-11122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MERMQLQGPI ASSLWADQQA AASTSAAVAA AAQMPFLALL QGAGIVVEDG QDGRKRNAAA  60
FASAADLDLL ESCVTQAAAA AGDPVASAPA TRAERRRKRP RPRTRAAPPP EKRRKPEEAE  120
SQRMTHIAVE RNRRRLMNDH LASLRSLIPS SYIPRGDQAT VVGGAIDYVK QLEQQLVALQ  180
AAAAARRGAA GAVGTAATAA SDGVFVSPQY ASYSEARGCC GGVDVEAMAA VGGHVRVRVA  240
GRRWPGRLVR AVAALEDLRL AVLHLAVTSV GHDAVVYCFN LKMEDGCEVA TADEVAAVVH  300
QIFAYAGGTC C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194104RRRKRPRPRTR
296102RKRPRPR
396114RKRPRPRTRAAPPPEKRRK
497101KRPRP
5122133RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3554700.0AK355470.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1021A13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798239.10.0transcription factor bHLH57-like
TrEMBLA0A2S3IUS90.0A0A2S3IUS9_9POAL; Uncharacterized protein
STRINGSi040271m1e-139(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-34bHLH family protein