PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 438aa MW: 47304.5 Da PI: 5.5394

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H02692.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.7	1.1e-27	161	215	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQkYR++ Pahal.H02692.1 161 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSH 215 6799***************.******************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.924	158	217	IPR017930	Myb domain
SuperFamily	SSF46689	6.54E-19	159	218	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-27	159	218	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-26	161	215	IPR006447	Myb domain, plants
Pfam	PF00249	5.9E-8	164	213	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007165	Biological Process	signal transduction
GO:0009658	Biological Process	chloroplast organization
GO:0009910	Biological Process	negative regulation of flower development
GO:0010380	Biological Process	regulation of chlorophyll biosynthetic process
GO:0010638	Biological Process	positive regulation of organelle organization
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MLAVSPVRCA DVEECRGGAG MEMEEIGPVS DLDFDFTVDD IDFGDFFLRL EDGDALPDLE 60 VDPGEIFTDF EGIATGSDGA MDQEVHSVQP LAENTTRVDV EEGKGECNHA EEVVAGNNGD 120 FGGGSVTVLA EEKSPSSTTS SSQEADSRYK STSKHSQGKK KAKVDWTPEL HRRFVQAVEQ 180 LGIDKAVPSR ILEIMGIDSL TRHNIASHLQ KYRSHRKHML AREAEAASWT QRRQMYAAGG 240 APAAVKRPDS NAWTVPTIGF PPPPPLAPHP MQHFGRPLHV WGHPTPGVES PRVPMWPRHL 300 VPRAPTPPWA PPPPSDPAFW HHPYMRGPSH MPGQVAPCVA VPMPAARFPA PPVRGVLPCP 360 PPMYRPLVPP ALGSKSQQDT QLQLQIQPSS ESIDAAIGDV LSKPWLPLPL GLKPPSVDSV 420 MGELQRQGVA DVPPACG*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MLAVSPVRCA DVEECRGGAG MEMEEIGPVS DLDFDFTVDD IDFGDFFLRL EDGDALPDLE  60
VDPGEIFTDF EGIATGSDGA MDQEVHSVQP LAENTTRVDV EEGKGECNHA EEVVAGNNGD  120
FGGGSVTVLA EEKSPSSTTS SSQEADSRYK STSKHSQGKK KAKVDWTPEL HRRFVQAVEQ  180
LGIDKAVPSR ILEIMGIDSL TRHNIASHLQ KYRSHRKHML AREAEAASWT QRRQMYAAGG  240
APAAVKRPDS NAWTVPTIGF PPPPPLAPHP MQHFGRPLHV WGHPTPGVES PRVPMWPRHL  300
VPRAPTPPWA PPPPSDPAFW HHPYMRGPSH MPGQVAPCVA VPMPAARFPA PPVRGVLPCP  360
PPMYRPLVPP ALGSKSQQDT QLQLQIQPSS ESIDAAIGDV LSKPWLPLPL GLKPPSVDSV  420
MGELQRQGVA DVPPACG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	5e-17	158	213	2	57	ARR10-B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269\|PubMed:19808806}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00022	PBM	Transfer from AT2G20570	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:11340194}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812542.1	0.0	probable transcription factor GLK1
Swissprot	Q5Z5I4	1e-165	GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBL	A0A2T8JCZ3	0.0	A0A2T8JCZ3_9POAL; Uncharacterized protein
STRING	Pavir.Db01285.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2415	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	7e-61	GBF's pro-rich region-interacting factor 1

Link Out ? help Back to Top
Phytozome	Pahal.H02692.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang Y, et al. A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes. Plant Methods, 2011. 7(1): p. 30 [PMID:21961694]