PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H02641.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family E2F/DP
Protein Properties Length: 445aa    MW: 48944 Da    PI: 8.9759
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H02641.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.11.5e-2357122171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     rkeksL+ll+++f+ l+++ + + + l+e+ak+L    v  +rRRiYDi+NVLe+++++ +k+kn+++w+g
  Pahal.H02641.1  57 RKEKSLGLLCSNFVVLYNRDDVESIGLDEAAKSL---GV--ERRRIYDIVNVLESVGILVRKAKNRYTWIG 122
                     79****************9999************...**..****************************98 PP
2E2F_TDP79.82.4e-25201281171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                     rkeksL+lltq+f+kl+ + e ++v+l+e+ak L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  Pahal.H02641.1 201 RKEKSLGLLTQNFVKLFLTMEVDTVSLDEAAKLLLGEgheetNMRTKVRRLYDIANVLSSLNLIEKiqqgdSRKPAFRWLG 281
                     79********************************************************************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.4E-2653123IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.04E-1656121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.3E-2957122IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.7E-2158122IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.8E-23198282IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.2E-32201281IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.1E-20202281IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.26E-13203282IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MSMAMAASSS SVAEVAAAAA AAAAMESALP QQQQEEEARP RPMLAGGAKS RHHAYSRKEK  60
SLGLLCSNFV VLYNRDDVES IGLDEAAKSL GVERRRIYDI VNVLESVGIL VRKAKNRYTW  120
IGFDGVPMAL RELKERALRE KSGLAPLQTE QQSASTVSDD EDDDKLGNPD GDIENEKLSQ  180
TVDNPSDKPG APRCRLRSDH RKEKSLGLLT QNFVKLFLTM EVDTVSLDEA AKLLLGEGHE  240
ETNMRTKVRR LYDIANVLSS LNLIEKIQQG DSRKPAFRWL GRAARPNAEN AVTVAVPPPG  300
KTVSNKRAFG TDITNIGVHR SNQDSSIQKK AKLAQSGGDI LKNCKSVVQS RLGQGKKSGF  360
VYGPFHPAGA RKHELDGGNK PGQRERAEDW ESLSDSFRPQ YQNQALGDLF AHYVEAWKTW  420
YSEFAQGSNI MQQHFGQSAV NHFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-38562733228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795108.10.0E2F transcription factor-like E2FE
TrEMBLA0A2S3GT590.0A0A2S3GT59_9POAL; Uncharacterized protein
STRINGGRMZM2G361659_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-105DP-E2F-like 1