PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H02488.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 565aa    MW: 59655.1 Da    PI: 4.8403
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H02488.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3021.4e-921255161373
            GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdgd.....pmqRlaayfteALaarlarsvs....elykalppsetseknsseelaalklf 84 
                     l +lL+++Aea+s   ++ ela+ +L rl++++s  gd     +m+Rlaa+ft AL+  l +s +    +  +a ++ +++++++ ++l+a++++
  Pahal.H02488.1 125 LLHLLMAAAEALSGphKSRELARVILVRLKQMVSHIGDnaavsNMERLAAHFTDALQGLLDGSHPvggaGRHAAAAAAASHRQHTGDVLTAFQML 219
                     579**********8557777**************9998888889****************99765221123344466666667799********* PP

            GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                     +++sP++kf+h+taNqaIleav+g++rvH++D+di +G+QW++L+qa+ sRp   +pp+lRiT+v++   g +++++e g+rLa fA+++g pf+
  Pahal.H02488.1 220 QDMSPYMKFGHFTANQAILEAVAGDRRVHVVDYDIAEGVQWASLMQAMISRPdsVPPPHLRITAVSRGGGGGARAVQEAGRRLAAFAASIGQPFS 314
                     ****************************************************888899*********7777************************ PP

            GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadh.nse......sFlerflealeyy 264
                     f     ++ e +++ + r+ +gE+l+ n+vl+       +v  +     ++L  + +l +kvv+vve++    + +       F++rf+e l+ y
  Pahal.H02488.1 315 FGQCRLDSDERFRPATVRMVKGETLIANCVLNQAAAT-TTVRRPTgSVASFLAGMATLGAKVVTVVEEDQGEpE-KdeeeagGFVARFMEELHRY 407
                     ***9999************************877776.444444347999******************954422.22344559************ PP

            GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees.gsl 358
                     sa+ dslea++p++s+ r  vEr++l+++i  +v+ +  +   + e  + W e+++  GF++vpls ++ +qa+lll  ++ dgy++ee s + +
  Pahal.H02488.1 408 SAVWDSLEAGFPTQSRVRGLVERAILAPNIAGAVSRAYCSVDGDDEARAGWGEWMRGNGFRAVPLSCFNHSQARLLLGLFN-DGYTMEETSpNKI 501
                     *********************************************************************************.******8862677 PP

            GRAS 359 vlgWkdrpLvsvSaW 373
                     vlgWk r+L+s+S+W
  Pahal.H02488.1 502 VLGWKARRLLSASVW 516
                     7************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.40899497IPR005202Transcription factor GRAS
PfamPF035144.9E-90125516IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MDVTMDDVPG DLDFSGCSST TTSSSSPSLD DGMGMYAWSG LSPVADWGSF CPYDGGQDLH  60
GLIESMLCDD TLVGAADLHP AMFPDEAYCC SNGSAPGSTT TTNPGTPVND GDAAQGDGPE  120
KGLRLLHLLM AAAEALSGPH KSRELARVIL VRLKQMVSHI GDNAAVSNME RLAAHFTDAL  180
QGLLDGSHPV GGAGRHAAAA AAASHRQHTG DVLTAFQMLQ DMSPYMKFGH FTANQAILEA  240
VAGDRRVHVV DYDIAEGVQW ASLMQAMISR PDSVPPPHLR ITAVSRGGGG GARAVQEAGR  300
RLAAFAASIG QPFSFGQCRL DSDERFRPAT VRMVKGETLI ANCVLNQAAA TTTVRRPTGS  360
VASFLAGMAT LGAKVVTVVE EDQGEPEKDE EEAGGFVARF MEELHRYSAV WDSLEAGFPT  420
QSRVRGLVER AILAPNIAGA VSRAYCSVDG DDEARAGWGE WMRGNGFRAV PLSCFNHSQA  480
RLLLGLFNDG YTMEETSPNK IVLGWKARRL LSASVWAPPP LSVPSSPAEG AFQPVGIVPA  540
SGGVGRMEFD YIDSFLVEPA YALV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5313351826379Protein SCARECROW
5b3h_D2e-5313351826379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432290.0AC243229.1 Panicum virgatum clone PV_ABa011-H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797459.10.0nodulation-signaling pathway 2 protein-like
SwissprotQ5NE241e-155NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2T7CEP50.0A0A2T7CEP5_9POAL; Uncharacterized protein
STRINGPavir.Ia03522.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-91GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]