PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H02487.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 238aa MW: 24388.7 Da PI: 5.6176 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.4 | 1.7e-18 | 34 | 83 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr ++ +g+Wv+eIr p ++++r++lg++ t+e Aa+a++aa ++l+g Pahal.H02487.1 34 PYKGVRMRS-WGSWVSEIRAP---NQKRRIWLGSYATPEAAARAYDAALLCLKG 83 59****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-28 | 34 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-34 | 34 | 97 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.614 | 34 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-11 | 35 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-8 | 35 | 46 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-19 | 35 | 92 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.80E-17 | 35 | 90 | No hit | No description |
PRINTS | PR00367 | 5.3E-8 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MVKNTSNGVA TATAFSDDKA RPESGVGGKS AARPYKGVRM RSWGSWVSEI RAPNQKRRIW 60 LGSYATPEAA ARAYDAALLC LKGSGAVLNF PAASSPSSSS SPHHVDTRHS DPASSSGAMS 120 PRSIQRAAAA AAAAFDAGLG ASVEDRCSSS AGATTTTSAS LSVSTLCSAD HVQEHATSSS 180 AAASTGSPAE GDELWTDLDA FASPKFMDLM ASGAAPFSST WEDPEDDGEV MRLWSFC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-13 | 25 | 91 | 7 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727660 | 6e-90 | KJ727660.1 Zea mays clone pUT5587 AP2-EREBP transcription factor (EREB173) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795709.1 | 1e-169 | ethylene-responsive transcription factor ERF014-like | ||||
TrEMBL | A0A2S3IS65 | 1e-168 | A0A2S3IS65_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia03856.1.p | 1e-131 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10830 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 6e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H02487.1 |