PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB

Protein Properties

Length: 281aa MW: 30459.6 Da PI: 7.0489

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H01784.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.7	2.3e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++q+G+g+W+++++ g+ R+ k+c++rw +yl Pahal.H01784.1 15 KGPWTPEEDIVLVSYIQQHGPGNWRSVPENTGLMRCSKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	47.5	4.2e-15	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ +++++ ++lG++ W++Ia++++ Rt++++k++w+++l Pahal.H01784.1 68 RGNFTPHEEGIIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 113 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.247	10	66	IPR017930	Myb domain
SuperFamily	SSF46689	1.55E-30	12	109	IPR009057	Homeodomain-like
SMART	SM00717	5.7E-13	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-15	15	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-23	16	69	IPR009057	Homeodomain-like
CDD	cd00167	6.57E-12	17	62	No hit	No description
SMART	SM00717	2.4E-13	67	115	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.148	67	117	IPR017930	Myb domain
Pfam	PF00249	2.3E-13	68	113	IPR001005	SANT/Myb domain
CDD	cd00167	4.49E-10	70	113	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-24	70	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009416	Biological Process	response to light stimulus
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0010118	Biological Process	stomatal movement
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MGRPPCCDNG VGVKKGPWTP EEDIVLVSYI QQHGPGNWRS VPENTGLMRC SKSCRLRWTN 60 YLRPGIKRGN FTPHEEGIII HLQALLGNKW AAIASYLPQR TDNDIKNYWN THLKKKVKRL 120 QQPAGDSFQT APSNAVTSPN YYSPTSSSHH SLQAGVQPIS SYPNTTCTTS APSNNEAGAI 180 SNLLQTWMRP SPAATANCKI AMQEFQEEQD AAASILCKDQ IVTGDVSKSP ALEMMVAPAM 240 GASTATFSLL EDWLLDDMPG QAMDGLMGIS AGCCADPIMF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	8e-26	15	117	27	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269\|PubMed:22018045}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00132	DAP	Transfer from AT1G08810	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269\|PubMed:22018045}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT083881	0.0	BT083881.1 Zea mays full-length cDNA clone ZM_BFb0050H17 mRNA, complete cds.
GenBank	EU955550	0.0	EU955550.1 Zea mays clone 1536772 mRNA sequence.
GenBank	KJ727611	0.0	KJ727611.1 Zea mays clone pUT5518 MYB transcription factor (MYB61) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826665.1	0.0	transcription factor MYB30-like
Swissprot	B3VTV7	5e-89	MYB60_VITVI; Transcription factor MYB60
TrEMBL	A0A2S3IES2	0.0	A0A2S3IES2_9POAL; Uncharacterized protein
STRING	Si026733m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	9e-84	myb domain protein 60

Link Out ? help Back to Top
Phytozome	Pahal.H01784.1

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507]