PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H01750.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 281aa    MW: 30618 Da    PI: 9.8019
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H01750.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM123.71.6e-38151431128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     l pGf+F+Ptde++vv+yL++++ + +l+   +i +vd+++++Pw+L     +++ e y+Fs+r ++ ++g+r++ra+ +g Wka+gkd +++sk
  Pahal.H01750.1  15 LEPGFKFRPTDEDVVVHYLRPRAMNAPLPS-GFIVDVDLLSHNPWELV---PEGSAEKYYFSRRVTRWPRGNRRKRAAGDGHWKASGKDVPIFSK 105
                     579*************************99.89**************4...4567899************************************8 PP

             NAM  96 ..kgel...vglkktLvfykgrapkgektdWvmheyrl 128
                       +g++   vglkkt+vfy+g+ap ge+t+Wvm+eyrl
  Pahal.H01750.1 106 giNGRVplmVGLKKTMVFYRGKAPFGENTEWVMEEYRL 143
                     663333788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-4213153IPR003441NAC domain
PROSITE profilePS5100542.89415211IPR003441NAC domain
PfamPF023654.8E-2117143IPR003441NAC domain
SuperFamilySSF1019415.75E-42199211IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAASHPIISG APILLEPGFK FRPTDEDVVV HYLRPRAMNA PLPSGFIVDV DLLSHNPWEL  60
VPEGSAEKYY FSRRVTRWPR GNRRKRAAGD GHWKASGKDV PIFSKGINGR VPLMVGLKKT  120
MVFYRGKAPF GENTEWVMEE YRLAEAGLMP GRVMRPREGG NFGKCGCAAA VIAKKNDELS  180
EALRNAIANL NKVPVLVNPD DSWVVCHIYK KKKKCAMPRV VAQSYNIAGG GQVPFFDFIG  240
QGNPERTASS SSSLTGPPSE KENDDTGGST NEKACSGEGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-311114311140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828753.10.0NAC transcription factor NAM-B1-like
TrEMBLA0A2S3IED00.0A0A2S3IED0_9POAL; Uncharacterized protein
STRINGPavir.Ha00546.1.p1e-174(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.14e-40NAC domain containing protein 47