PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H01643.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 480aa    MW: 51921.4 Da    PI: 4.4357
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H01643.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.94e-19141582127
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya............tgkrknratks 80 
                     p+G+rF Pt  el+   L  +++g++   +l++++++v+i++++P++L +++k   e++ +yfFs r+ +++            ++ r+ r+++ 
  Pahal.H01643.1  14 PRGYRFVPTSLELI-SILSDQIRGRTlpPPLHTIFQDVRILDYHPEELYERFKDaaEHRYIYFFSVREFQKPgacaavpedkdqKEPRPVRVARG 107
                     89************.78********976677778**************8655442255577*****999988777777776554455899999** PP

             NAM  81 gyWkatgkdkevlsk...kgelvglkktLvfy.kgrapkgektdWvmheyr 127
                     g Wk +g  + +      +g + g   t+vfy + +  +g+k++W mhe+ 
  Pahal.H01643.1 108 GGWKPSGGGQVLRWPrkkGGFVAGRMVTMVFYdRVDGGDGVKSNWGMHEFL 158
                     *******9777665544455569999******556999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-248169IPR003441NAC domain
PROSITE profilePS5100524.29613187IPR003441NAC domain
PfamPF023651.9E-1014157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MAAADGSLTK HGFPRGYRFV PTSLELISIL SDQIRGRTLP PPLHTIFQDV RILDYHPEEL  60
YERFKDAAEH RYIYFFSVRE FQKPGACAAV PEDKDQKEPR PVRVARGGGW KPSGGGQVLR  120
WPRKKGGFVA GRMVTMVFYD RVDGGDGVKS NWGMHEFLVP VHPRLTSLTD NKYIRFYDLA  180
LYRLYILKGG DMESENGAGS SSSSSIQMMS NAYDHFPVSP CPPLQPWGIS TGNYHRPLDA  240
GASTSQMLPP PPQHPSLEHA QYYQYQQQHA FGAAAAPQAY TMPVHGAEFP GNMYQYQPAI  300
PPAPVAAPTA AANAAEEAHA TATDGDGQDE AGPSGATRSP SPPPAAASPP AEPHANAATE  360
PGHVQFADCG KPKEAAAAPT QEDVVPPAPE DERMADVDDD SELGVDDYSE LGMQDWNNFD  420
LMPLDDSYLE FTIEEILGLP AFDDEPPAME GDGNNSGGEN YSQADGGTQE EPPAALGCY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791727.11e-178NAC domain-containing protein 72-like
TrEMBLA0A2S3IM790.0A0A2S3IM79_9POAL; Uncharacterized protein
STRINGPavir.Ib03441.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.18e-11NAC family protein