PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H01224.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRF
Protein Properties Length: 536aa    MW: 57633.5 Da    PI: 10.2382
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H01224.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.6e-24273317145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  Pahal.H01224.1 273 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 317
                     79****************************************986 PP
2QLQ61.13e-21198232236
             QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                      FTaaQ+++L++Q+l+yKyL+a++PvPp+Ll++++
  Pahal.H01224.1 198 VFTAAQWAELEQQALIYKYLMAGVPVPPDLLLPVR 232
                     5********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.5E-11197233IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.07198233IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.4E-15199232IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.346273317IPR014977WRC domain
PfamPF088797.1E-21274316IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MSAYKRCNQP TTKPGMKEVH KKVAWKSRKQ KGRDMENGRG LEKKREVKTR GCPWKGSRGA  60
GQAPAPGAVQ EDRPPDRRGE AGGIPSQSQA KQIQAASSLL SADPPTDSPS LSTSINGRHQ  120
EPSNPHLTSL PTRLRRRPFP TPSVGTFLVG LKEEGKGGGV ERTGGARPSM LSSASSAGAG  180
MGVGVGGGYP PPQRGAAVFT AAQWAELEQQ ALIYKYLMAG VPVPPDLLLP VRPSPHSAAA  240
AFSFASPGAA ASPFYHHHHP SLSYYAYYGK KLDPEPWRCR RTDGKKWRCS KEAHPDSKYC  300
ERHMHRGRNR SRKPVESKTA SPAHPSQPQL STVTTTTRET APLDSLTAGG KTHGLSLGGA  360
GSSQLHVDAS NAHYRYGSKY PLGAKADAGE LSFFSGASGN SRGFTIDSPT ENSWNSLPSN  420
VPPFTLSKSR DSGLLPGTYS YSQLEPPQEL GQVTIASLSQ EQERHSFSSG AGGLLGNVKQ  480
ENQPLRPFFD EWPGTRDSWS EMDDVRSNRT SFSTTQLSIS IPMPRCEFPM GLVLP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811709.10.0growth-regulating factor 5-like isoform X1
SwissprotQ6AWY40.0GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLA0A2T8JF370.0A0A2T8JF37_9POAL; Uncharacterized protein
STRINGPavir.Da02366.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110462431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.17e-22growth-regulating factor 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]