PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H01191.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 683aa MW: 73162.6 Da PI: 4.9634 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.5 | 2.2e-08 | 476 | 496 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+++ +G C +GdrCkF+H+ Pahal.H01191.1 476 CHNYKNNGMCIRGDRCKFSHV 496 ********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.981 | 416 | 443 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-5 | 416 | 441 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0038 | 417 | 442 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 445 | 471 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.774 | 445 | 472 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-5 | 446 | 470 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.064 | 473 | 497 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.624 | 475 | 498 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-4 | 476 | 495 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-5 | 476 | 496 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MEDALATSPL APPPAPLAAA AVLTRRRSHL DSASYRTLSR LFSHCLHLQP SSREGTAPTE 60 GEPAVANPTG GDSGDSAQVP GGADFDRLKD VEKEAEDAGG PSLQETVSPA REQPAASNPT 120 CDPCESEAPQ RSHDDVDEVV AVESTCGNTG AVVEESGIGA GMVVVEDDAL KLVKACLETT 180 DVDESVEGAL GNDDGQLLLD AMMTNFTGLI DDVGAGVIPV QTCVVSGVEL QDSKASEDLK 240 QSGGGIEDGE PVRNLDRKMN EDGGFEEGEI EGEFQDLDSE ESGDSELVDD DNAEDEKLGG 300 YSVSRGSGAC DHGIQSVNLH SKPGIIGNGH LTLNKDANVR GDEQISVTRA QAVSYDEVVD 360 WNVTPLPDNV ATNPGKKTKR TLTEERKAKK TENKRKKRAQ QRIADGVKRP KLQHVTKPKK 420 PCHFYDHGKC QQGSKCKFSH DFTPTTKSKP CKHFACGSCL KGDDCPYDHE LSKYDCHNYK 480 NNGMCIRGDR CKFSHVMRTT EGTPTQDAKP SDASLAYEKT NRREHVSSQK TPTVHNGEPV 540 TSASTKQQCS ILKNLAGFSI NSQNISDRIP KGVQFLPFDK SGSNLSSPHL DALSIEKPRN 600 ANATQHQYFG GHGAEKQKIS KQNGQESLLD EKNSSNEATM LPFSDPPKAS LPTNSAATSV 660 HTQPEISEAS RILQEFLFGA GS* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817940.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_025817941.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_025817942.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Swissprot | Q657B3 | 0.0 | C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7 | ||||
TrEMBL | A0A2S3HV33 | 0.0 | A0A2S3HV33_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb02489.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8838 | 37 | 43 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H01191.1 |
Publications ? help Back to Top | |||
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