PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pahal.H01099.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 733aa MW: 77957.2 Da PI: 9.7368

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H01099.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	65.9	8.4e-21	316	434	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk................................lkkplWeevskkmrergferspkqCkekwenlnkrykk 63 +Wt+++v++Li+++ +++++ + +kk++W++vs++m e+gf++sp+qC++k+++lnkryk+ Pahal.H01099.1 316 KWTDSMVRLLITVVYNVGDDGDGVApaggagggkpakagssahgghghghaaaaqqqQKKGKWKSVSRAMGEKGFTVSPQQCEDKFNDLNKRYKR 410 799999999999999666665543333344555556666666666666677777777************************************ PP trihelix 64 ikegekkr.tsessstcpyfdqle 86 + + +++ +++++++++++d ++ Pahal.H01099.1 411 VVDLLGRGrACRVVENHALLDAID 434 *99967*****9999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.0E-17	314	460	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MNNSHARSLA TVEGLFYNRQ TNFPSGGGGK KRKTAKRKET PVKTKTGGSP LPAAVSQSSP 60 PQAVPDLLRP PQPTPRAPHR SARRVNRKRV GAGHPRRFRG PVGSHRWNRG GAGDKTEYPS 120 RCRAVAAARA KPAASAHTAA PIKTPSPLPL SNGGAVESRG RAIQRARGRE SAGSFGEIGG 180 LAMERGDGGG GMAPRGGGGG VVGSAAMLGL DMHLAPQQMH QAAAFQQQPQ AEHHHGGFQL 240 HQPAPVRHQQ QQQQQQPPSF SPYSNTSSSR VVTSAAGVGH DDEMVGNGCF GGKAGVVQQQ 300 QQQMAAAAGC PWTRMKWTDS MVRLLITVVY NVGDDGDGVA PAGGAGGGKP AKAGSSAHGG 360 HGHGHAAAAQ QQQKKGKWKS VSRAMGEKGF TVSPQQCEDK FNDLNKRYKR VVDLLGRGRA 420 CRVVENHALL DAIDDLSAKA KDEARKLLSS KHLFFREMCA YHNGGGPHAP PHAAAGGDAA 480 CLHHPPPAPA ASSAARHAQQ QQHLAAPSPP GMKDSSADDD DDSDDALSNN GDDDEEDYGD 540 DDEDGHVYPL NHHAHHHHHH NGGGRGKRGR GEDSGAAEDD NEDDAGGKRA RAAASVEQSA 600 VVQQLKGELA AATAAAADPQ QFRCWVRRRA VEVEEQQVAL ESRGFELETQ RLKWERFRAN 660 KERDMERARL ENDRLRIEGR RMLLLLRHKD IELDMAEANS SSVDHHPAAS PLAAHYQPQP 720 MGSSPSTAGH PN*

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MNNSHARSLA TVEGLFYNRQ TNFPSGGGGK KRKTAKRKET PVKTKTGGSP LPAAVSQSSP  60
PQAVPDLLRP PQPTPRAPHR SARRVNRKRV GAGHPRRFRG PVGSHRWNRG GAGDKTEYPS  120
RCRAVAAARA KPAASAHTAA PIKTPSPLPL SNGGAVESRG RAIQRARGRE SAGSFGEIGG  180
LAMERGDGGG GMAPRGGGGG VVGSAAMLGL DMHLAPQQMH QAAAFQQQPQ AEHHHGGFQL  240
HQPAPVRHQQ QQQQQQPPSF SPYSNTSSSR VVTSAAGVGH DDEMVGNGCF GGKAGVVQQQ  300
QQQMAAAAGC PWTRMKWTDS MVRLLITVVY NVGDDGDGVA PAGGAGGGKP AKAGSSAHGG  360
HGHGHAAAAQ QQQKKGKWKS VSRAMGEKGF TVSPQQCEDK FNDLNKRYKR VVDLLGRGRA  420
CRVVENHALL DAIDDLSAKA KDEARKLLSS KHLFFREMCA YHNGGGPHAP PHAAAGGDAA  480
CLHHPPPAPA ASSAARHAQQ QQHLAAPSPP GMKDSSADDD DDSDDALSNN GDDDEEDYGD  540
DDEDGHVYPL NHHAHHHHHH NGGGRGKRGR GEDSGAAEDD NEDDAGGKRA RAAASVEQSA  600
VVQQLKGELA AATAAAADPQ QFRCWVRRRA VEVEEQQVAL ESRGFELETQ RLKWERFRAN  660
KERDMERARL ENDRLRIEGR RMLLLLRHKD IELDMAEANS SSVDHHPAAS PLAAHYQPQP  720
MGSSPSTAGH PN*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814752.1	0.0	stress response protein NST1-like
TrEMBL	A0A2T8IMJ6	0.0	A0A2T8IMJ6_9POAL; Uncharacterized protein
STRING	GRMZM2G305362_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11944	31	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	2e-40	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Pahal.H01099.1