PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H00954.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 362aa MW: 38706.3 Da PI: 4.8246 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.5 | 6.4e-50 | 9 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtd+elv++yL +k+ g +l + vi+evd+yk++Pw+Lp+k++++ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+v s Pahal.H00954.1 9 LPPGFRFHPTDDELVMYYLLRKCGGLPLAA-PVIAEVDLYKFDPWSLPEKAAGGEKEWYFFSPRDRKYPNGSRPNRAAGAGYWKATGADKPVGS- 101 79*************************999.89***************999999**************************************99. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 + v +kk Lvfy g+ p+g+kt+W+mheyrl Pahal.H00954.1 102 -PRPVAIKKALVFYAGKPPRGVKTNWIMHEYRL 133 .779***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-60 | 5 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.828 | 9 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-25 | 10 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MDFGGALQLP PGFRFHPTDD ELVMYYLLRK CGGLPLAAPV IAEVDLYKFD PWSLPEKAAG 60 GEKEWYFFSP RDRKYPNGSR PNRAAGAGYW KATGADKPVG SPRPVAIKKA LVFYAGKPPR 120 GVKTNWIMHE YRLADVDRSA AARKKTNNNA LRLDDWVLCR IYNKKGVIER YDTVDDDEGA 180 AAAADDVKPA ATKNPRGAGG RAPMKVEVAD YGGYYDDYDL ETPSAGMLCF DRPTAAAPVP 240 APAPALAPAP ALSPTEPDPD RDSSSMPWMH TDNSSSGSEH ELSPSPDLPD RDHAESQPGG 300 GGAGWWPGAD WSGAAGDDGF LVLDDGGAAL FGPPSPGLFA RVDVAAAAAF GDMFAYLQRP 360 F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-74 | 2 | 170 | 8 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069960 | 0.0 | BT069960.1 Zea mays full-length cDNA clone ZM_BFb0347F20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827492.1 | 0.0 | NAC domain-containing protein 71-like | ||||
Swissprot | Q53NF7 | 1e-150 | NAC71_ORYSJ; NAC domain-containing protein 71 | ||||
TrEMBL | A0A2S3ICY5 | 0.0 | A0A2S3ICY5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha00897.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11804 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 5e-92 | NAC domain containing protein 32 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H00954.1 |
Publications ? help Back to Top | |||
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