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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H00921.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 296aa MW: 31931.9 Da PI: 8.492 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.5 | 1e-10 | 62 | 104 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GVr g+WvAeIr+p + r +r +lg+f t a+a++aa+++l+g Pahal.H00921.1 62 PFRGVR----CGKWVAEIREP---N-RgARLWLGTFAT----ARAYDAAARALYG 104 689997....79********8...3.35**********....8888888888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.141 | 45 | 112 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-20 | 62 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-17 | 63 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-11 | 63 | 111 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.3E-4 | 69 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MDVVVQHQQQ RLLPLPPFHQ QAAALQQHQQ KAGGGGRKCC PLRRSRKGCV KGEGGPENQR 60 CPFRGVRCGK WVAEIREPNR GARLWLGTFA TARAYDAAAR ALYGDCARLN LMPALPQAEA 120 AAAAAANNNM VALKPSPAAS PSSPGHHHQY YNYKQEPVMM AAAMTHSAPC CSADDASPNS 180 NCSNYSNSSS SAATTPTAAT AMQQMMADEL AAVKDLHQQQ AEAEDFEDYV TRLPKAEDFG 240 LGGFQEVPPE VFDEAAGGGI RDHHRRLAVL GHDARLRPAG RPSLIDWTTT RLIRR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108143 | 3e-49 | AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence. | |||
GenBank | AP004623 | 3e-49 | AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05. | |||
GenBank | AP005411 | 3e-49 | AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16. | |||
GenBank | AP014964 | 3e-49 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY339375 | 3e-49 | AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds. | |||
GenBank | CP012616 | 3e-49 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680796.1 | 1e-77 | dehydration-responsive element-binding protein 2C-like | ||||
Swissprot | Q84ZA1 | 7e-58 | DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | A0A2T7CL14 | 1e-124 | A0A2T7CL14_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J25464.1.p | 1e-105 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5510 | 34 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 3e-17 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H00921.1 |
Publications ? help Back to Top | |||
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