PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00903.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 297aa    MW: 31996.8 Da    PI: 5.6573
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00903.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM613.8e-19101531128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratk......sgyWkatgk 88 
                     lpp  +F+Ptd ++v +yL +++ g +++  ++i ++d +++ Pw++ +++ + ++ + +fF + +  +   kr+ ra++       g+W  + +
  Pahal.H00903.1  10 LPPANKFDPTDADIVAHYLLPRAVGFPNPHGHAIIDADPCSCPPWEFMRRHGHADSdHAFFFGRPRGPE-PRKRAARAVDpgedgvGGTWDGQRS 103
                     68999**********************999889**************8655555552556666655555.5689999855555556899*97666 PP

             NAM  89 ..dkevlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ vls+         + e++  +++L +y+g +++ + + Wvmh+y++
  Pahal.H00903.1 104 eaTRFVLSRgggagpgaaRLEVTYKRHSLSYYHGPQKS-KTSGWVMHDYQI 153
                     225667776665555544444488899*****876665.7899******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-255169IPR003441NAC domain
PROSITE profilePS5100522.74710170IPR003441NAC domain
PfamPF023654.3E-1311153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEAYRFGFNL PPANKFDPTD ADIVAHYLLP RAVGFPNPHG HAIIDADPCS CPPWEFMRRH  60
GHADSDHAFF FGRPRGPEPR KRAARAVDPG EDGVGGTWDG QRSEATRFVL SRGGGAGPGA  120
ARLEVTYKRH SLSYYHGPQK SKTSGWVMHD YQIVDPPHLS GTVLYRVRIT DRRKQQQQQQ  180
EADAVTVAGH QVVPPGPDQP GPSNYCEVQE YGGLVGDTGG CYAGGGRGGN NNYLHDGGVI  240
GETGGYDYVG DGSSHYLNQD LSCYMYHGDG SGGDDDYFFN VGDDNSFECP DGGNGG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827521.10.0NAC domain-containing protein 67-like
TrEMBLA0A2S3ICY40.0A0A2S3ICY4_9POAL; Uncharacterized protein
STRINGPavir.J02970.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143011926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-10NAC domain containing protein 25