PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pahal.H00891.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 397aa MW: 41226.5 Da PI: 9.1202

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H00891.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	138.7	4.8e-43	107	249	2	124
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 a++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ a+s +s as++ss+++a++a Pahal.H00891.1 107 APAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFTsLAVSLRSGASHPSSASRAAAAF 201 899******************************************************************99999999999999999995555555 PP TCP 96 .kskksqksaasalnlakesr..................akararare 124 + +++++ a++l ++ ++ a + +r+r+ Pahal.H00891.1 202 hHLPPPHHEVAAMLGWNHGHHhhqqflpppqqqapqdpgAGEFMRKRY 249 588999999999999988444356666666655555555555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.349	113	167	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.3E-36	113	223	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MDAPSSSTST STNSSRSASE QQHQHQQQRQ HRQHHAAGQP HHPFYYAAAP APGAAAANAA 60 GMPQFMGSLV IVQAPSAGAG AGEVQLAQAA PAPGPSGGAE KKPVVPAPAK RPTKDRHTKV 120 EGRGRRIRMP ALCAARVFQL TRELGHKTDG ETIEWLLQQA EPAIVAATGT GTIPANFTSL 180 AVSLRSGASH PSSASRAAAA FHHLPPPHHE VAAMLGWNHG HHHHQQFLPP PQQQAPQDPG 240 AGEFMRKRYR DGADDLFKDA AARQNPDDGG GGEAEEHKAR VAPPAGAMWA VAPPNSSAAG 300 AFWMQPAWAF GAGAGGSTVQ APLQFMSTRS NNNNNFPAGA TMDANIGMLA ALNASGGVQH 360 QQQQEQEEQP PEMAQRHRTG AGANGGDAGR GAASPQ*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MDAPSSSTST STNSSRSASE QQHQHQQQRQ HRQHHAAGQP HHPFYYAAAP APGAAAANAA  60
GMPQFMGSLV IVQAPSAGAG AGEVQLAQAA PAPGPSGGAE KKPVVPAPAK RPTKDRHTKV  120
EGRGRRIRMP ALCAARVFQL TRELGHKTDG ETIEWLLQQA EPAIVAATGT GTIPANFTSL  180
AVSLRSGASH PSSASRAAAA FHHLPPPHHE VAAMLGWNHG HHHHQQFLPP PQQQAPQDPG  240
AGEFMRKRYR DGADDLFKDA AARQNPDDGG GGEAEEHKAR VAPPAGAMWA VAPPNSSAAG  300
AFWMQPAWAF GAGAGGSTVQ APLQFMSTRS NNNNNFPAGA TMDANIGMLA ALNASGGVQH  360
QQQQEQEEQP PEMAQRHRTG AGANGGDAGR GAASPQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT063432	0.0	BT063432.1 Zea mays full-length cDNA clone ZM_BFc0063A06 mRNA, complete cds.
GenBank	KJ726897	0.0	KJ726897.1 Zea mays clone pUT3442 TCP transcription factor (TCP2) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827969.1	0.0	transcription factor PCF3-like
Swissprot	Q53PH2	1e-89	PCF3_ORYSJ; Transcription factor PCF3
TrEMBL	A0A2S3ICT6	0.0	A0A2S3ICT6_9POAL; Uncharacterized protein
STRING	Pavir.Ha00851.1.p	1e-163	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	1e-41	TCP family protein

Link Out ? help Back to Top
Phytozome	Pahal.H00891.1