PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00785.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 376aa    MW: 40274.2 Da    PI: 7.3924
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00785.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.71.2e-411002321128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                     lppG+rF Pt+eel+ +yL+++++g++ ++e++i+ vdiy+++P +L++   +++  ++++w+fF++r++++ +g r+ r+t +gyWkatg+   
  Pahal.H00785.1 100 LPPGYRFYPTEEELLGFYLRHRLAGTRAQVEHFIPVVDIYSYHPAQLQAmagAANVgDKEQWFFFCPRAERELSGGRPARTTPTGYWKATGSPSY 194
                     79****************************999**************95355222335669********************************** PP

             NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     v+s+  ++++g k+t+vfy+grap+g+kt+W m+ey++
  Pahal.H00785.1 195 VYSApASRVIGEKRTMVFYEGRAPTGTKTRWKMNEYKA 232
                     ***988999***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-4797261IPR003441NAC domain
PROSITE profilePS5100547.864100261IPR003441NAC domain
PfamPF023651.3E-21101231IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MAVAMHLQLL QSFANLLQSP SPSSTVCERG SYYRTPSPAG SINTARVLAN LQAITPGQGD  60
IVSHHTDHQF VGGKVAIGIM LLQTRMGSGR SSGSDHDPVL PPGYRFYPTE EELLGFYLRH  120
RLAGTRAQVE HFIPVVDIYS YHPAQLQAMA GAANVGDKEQ WFFFCPRAER ELSGGRPART  180
TPTGYWKATG SPSYVYSAPA SRVIGEKRTM VFYEGRAPTG TKTRWKMNEY KAVAADDAPP  240
PAGAPAVRLR NEFSVCRVYT SNGTLRSFDR RPLNPPAGGG LDQAAAHRCQ QQEALLVPPP  300
PPPASQMAAV DAVAASNGQS SEHSHGSPSS SGSLGVVVDG AEDAAAAIDW DALIPPVDFL  360
RFSVDDLSHV VWPPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-30862631170Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828030.10.0NAC domain-containing protein 90-like isoform X3
TrEMBLA0A2S3ICK20.0A0A2S3ICK2_9POAL; Uncharacterized protein
STRINGPavir.Ha01768.1.p1e-138(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.21e-62NAC domain containing protein 61