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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H00213.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 547aa MW: 61862.7 Da PI: 6.7832 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 216.9 | 1e-66 | 198 | 538 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++lL++cA+av+++++ a +lL++++ +as +gd++qR+a+ + + L a + + s ++e l+a++l++ ++ + k++ Pahal.H00213.1 198 RTLLISCAQAVATNNHMGACELLKKIKRHASATGDATQRVAHQLWQLLMA---E------------RPS---VVEFLKAYRLYFAACCFNKVALS 274 789**************************************997764433...2............233...89********************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgv.pfefnvlvakrle 187 +I+ a+ g++++Hi+D++ ++gp +++iT+++ p + +e++ee+g rL+k A+e+g+ +f+f++ ++ ++e Pahal.H00213.1 275 FSTMTIYHAMVGKRKLHIVDYE-----------------KGGPTEVKITAIAGPPKLkscPAERIEELGCRLSKCAHEFGLaSFKFHT-ITMKWE 351 ********************97.................57999*******9887767899*******************957*****.6889** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 d+++e+L+++ gE+l+Vn ++ +l+desv +s +rd+vL+ +++++P+v++ ++++ ++sFl+rf e ++yy alfd l+a++pres+ Pahal.H00213.1 352 DVRIEDLNTDAGEVLVVNDLFNFSTLMDESVFFDSqsPRDTVLSNIRKMRPDVFIQRVLNCSC-GSSFLTRFREVMSYYLALFDILDATMPRESK 445 ******************************97766669****************999999999.679**************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 r+++E+++lgr + n++aceg + +er e++++W+ r ++aG++++pl++++++ +k ++k++ + + + e+ ++l++gW++r L++ S W Pahal.H00213.1 446 SRVVLEQFVLGRPALNIIACEGPDLVERPEKYRQWQVRNQRAGLRQLPLRSRIVEVVKDSVQKHHHKDFLISEDGQWLLQGWMGRVLFAHSTW 538 *****************************************************************888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 32.658 | 171 | 519 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.6E-64 | 198 | 538 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 547 aa Download sequence Send to blast |
MTLPYISRVL LEDDVDDKLD DHPALLQVQQ PFAQILSSSS YGTSTGNAEG AKELLQDGSD 60 DESTFNLNSA LSKGTDAVRA FLKGMEEANM LLPKDNKFRG DVPVNQMVQE SSNHSGDKKR 120 YDRDNHTEEE IRTSKTAKMI KDPEENCANE MLDEMMLHAY ETCIRGMDEL RASMDSKVEK 180 ENRKNCSKAA KGNVVDIRTL LISCAQAVAT NNHMGACELL KKIKRHASAT GDATQRVAHQ 240 LWQLLMAERP SVVEFLKAYR LYFAACCFNK VALSFSTMTI YHAMVGKRKL HIVDYEKGGP 300 TEVKITAIAG PPKLKSCPAE RIEELGCRLS KCAHEFGLAS FKFHTITMKW EDVRIEDLNT 360 DAGEVLVVND LFNFSTLMDE SVFFDSQSPR DTVLSNIRKM RPDVFIQRVL NCSCGSSFLT 420 RFREVMSYYL ALFDILDATM PRESKSRVVL EQFVLGRPAL NIIACEGPDL VERPEKYRQW 480 QVRNQRAGLR QLPLRSRIVE VVKDSVQKHH HKDFLISEDG QWLLQGWMGR VLFAHSTWVA 540 EDISSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-18 | 201 | 538 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008677891.1 | 0.0 | scarecrow-like protein 34 isoform X1 | ||||
Refseq | XP_008677892.1 | 0.0 | scarecrow-like protein 34 isoform X2 | ||||
TrEMBL | A0A2T8IAC2 | 0.0 | A0A2T8IAC2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha00217.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 4e-98 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H00213.1 |