PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pahal.H00121.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 154aa MW: 16317.4 Da PI: 10.5656

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H00121.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg+sF + L H +H Pahal.H00121.1 43 FRCRTCGRSFATFQALGGHRTSH 65 89**********99998888777 PP
2	zf-C2H2	18.4	5.9e-06	92	114	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++F++ L H+r+H Pahal.H00121.1 92 HRCNTCGMVFTTGQALGGHMRRH 114 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.0E-9	42	66	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.9E-8	43	114	No hit	No description
PROSITE profile	PS50157	11.094	43	70	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.18	43	65	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	45	65	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.2E-11	91	116	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.723	92	114	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0085	92	114	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	94	114	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MATTARSSTA DLLLYLSLST ASKVIAKAGG GRHHRDRAAD GAFRCRTCGR SFATFQALGG 60 HRTSHNRPRV RADGLDLLLG ARPGKGAASD VHRCNTCGMV FTTGQALGGH MRRHRAAVFD 120 AVVAAVPETT TTTSFRDSDD DEGHLPIQLI QFI*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828381.1	1e-107	zinc finger protein ZAT11-like
TrEMBL	A0A2S3IFT9	1e-105	A0A2S3IFT9_9POAL; Uncharacterized protein
STRING	Pavir.Ha00194.1.p	3e-85	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6730	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	8e-23	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pahal.H00121.1