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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H00105.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 1528aa MW: 167903 Da PI: 4.7638 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 333.2 | 4.7e-102 | 413 | 779 | 1 | 367 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++ L++cA+ v++gd + a +lL ++++++sp+gd++qR+a++f+e+L+arla+++s++y++l +++ts ++e l+a+klf +s + k+ Pahal.H00105.1 413 LRTMLIHCAQSVATGDRRSAMELLRQIKQHSSPRGDATQRMAHCFAEGLEARLAGTGSQVYQSLMAKRTS---VVEFLKAYKLFMAASSLKKVHI 504 5789************************************************************999999...********************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + Nq+Il+av+g +++Hi+ +++ +GlQWp Ll+ L+ R++gpp++R Tg++ p++g + ++eetg+rL++ A e+gvpf+f++ +a ++e+ Pahal.H00105.1 505 MFSNQTILDAVAGRSKLHIVVYGVHYGLQWPGLLHFLSRREGGPPEVRFTGIDLPQPGfrPAYQIEETGRRLSNCALEFGVPFKFQA-IAAKWET 598 *********************************************************99999*************************.799**** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 + e+L+++p+E+l+V++ +l+desv+++ +rd vL+ +++++P+v+++ + ++++ Fl+rf eal +ysalfd+l+a++pr+++e Pahal.H00105.1 599 VCAEDLNIDPDEVLVVHSECDFSKLMDESVDVDTpsPRDMVLNNIRKIRPNVFILFVMNGTYGAPFFLTRFREALFFYSALFDMLDATIPRDNDE 693 ****************************998776669********************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 r +Er ++gr++ nv+acega+r+er et+++W+ r ++aG+k++pl+ +++k ++ +++++ + + ++e++ +l++gWk+r+L Pahal.H00105.1 694 RLLIERDIFGRSALNVIACEGADRVERPETYKQWQVRNHRAGLKQLPLNPEVVKIVRDKVKNYYHKDFLIDEDHRWLLQGWKGREL 779 ****************************************************************889*****************98 PP | |||||||
2 | GRAS | 330.7 | 2.7e-101 | 1147 | 1518 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 +lL++cA+av++++ + a++lL ++++++sp+gd++qRla++f+e+L+arla+s+s++y++l +++ s ++e l+a++l+ +s + ++ Pahal.H00105.1 1147 STLLIHCAQAVATDNCRSATELLRQIKQHSSPRGDATQRLAHCFAEGLEARLAGSGSQVYRSLMAERIS---VVEYLKAYQLYLAASCFKMMA 1236 579************************************************************999998...********************* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 + N +I + ++g ++vHi+D++i++G+QWp+Ll +a+ ++gpp++RiTg++ p++g + ++eetg+rL++ A++lgvpf+f+ ++ r Pahal.H00105.1 1237 FKFSNMTIFKVIAGRKKVHIVDYGIQYGFQWPSLLGYMATLKGGPPQVRITGIDLPQPGfrPASRIEETGRRLSNCASQLGVPFKFHS-ITAR 1328 **********************************************************9*9***************************.699* PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 +e+++ ++L+++p+E+l+Vn++ + +l+de v+++s +rd vL+ + +++P+ +++ +a+++++ F++rf eal ++sa+fd+l+a++p Pahal.H00105.1 1329 WETISADDLNIDPDEVLIVNSIRNFGNLMDEGVDIDSpsPRDVVLSNICKMKPDAFILFVMNASYSAPFFVTRFREALFFHSAMFDMLDATAP 1421 *********************************9999889***************************************************** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 re+++r vEr l+++ + nvvaceg++r+er et+++W+ r ++aG++++pl+ +++k ++ +r+ + + + ++ ++++l+ gWk+r L++ Pahal.H00105.1 1422 RENHQRFLVERGLFRKCALNVVACEGSDRVERPETYKQWQVRNRRAGLRQLPLDPDVVKAVREKVREQYHKDFVIDVDHQWLLEGWKGRILYA 1514 *********************************************************************888********************* PP GRAS 370 vSaW 373 +S W Pahal.H00105.1 1515 MSTW 1518 **** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.509 | 387 | 766 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-99 | 413 | 779 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 58.628 | 1120 | 1499 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.5E-99 | 1147 | 1518 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 1528 aa Download sequence Send to blast |
MSATPEEFLG QGAYLAAPEP FSPSVFLDLP PTPRPDADDP ASSDDLVLPF ISRMLMEEDI 60 DDKFFYEFPD HPALLNAQQP YAQILLSDES ATNSSSNSSS GGTAANSTLS PSSSSDAPAS 120 AEPAWPYDPI ELSQLLRSPP YSDTVLGLHD FTADDVDALL LQGQGEATAG FHQTPPFLDT 180 GGGGAGGGER QGAVSIAAQN AAGDESPSLA AQNAAGIESS AADEQDTKTT NATTLPAADG 240 DPAALASAFF SGQSGESMDM LNMAFLKGME EAKKFLPTNN SLLIDLEDTS GQSLPRDGKP 300 ATGFAAAQVK EEAVADGMLL FGGSNTGRGR KNCHTDEDLE AETGRNSKLM MPEQEETGAS 360 ELFDELMSCN FDGFLKRMND LRIAMDSESE KSARRVSGKG ARGRQRANEV VDLRTMLIHC 420 AQSVATGDRR SAMELLRQIK QHSSPRGDAT QRMAHCFAEG LEARLAGTGS QVYQSLMAKR 480 TSVVEFLKAY KLFMAASSLK KVHIMFSNQT ILDAVAGRSK LHIVVYGVHY GLQWPGLLHF 540 LSRREGGPPE VRFTGIDLPQ PGFRPAYQIE ETGRRLSNCA LEFGVPFKFQ AIAAKWETVC 600 AEDLNIDPDE VLVVHSECDF SKLMDESVDV DTPSPRDMVL NNIRKIRPNV FILFVMNGTY 660 GAPFFLTRFR EALFFYSALF DMLDATIPRD NDERLLIERD IFGRSALNVI ACEGADRVER 720 PETYKQWQVR NHRAGLKQLP LNPEVVKIVR DKVKNYYHKD FLIDEDHRWL LQGWKGRELE 780 KLRFLTHPHP AAMAATPEGL FADPEPFSPS IFLDLPPTPR PDGIGEGPAS SDDLVLPFIS 840 RMLMEEDMDD NFLYQFTDHP ALLQAQEPYA RILSDANSTA SGSAATLSPS SDYDPVQLLL 900 SPLCPDMGLH DFNNGDVGAF FLPAQDGASP ELEQNPAQSG NAGDANAFVG YGGSTGVQSS 960 AFLDAADEQS PAQLGTTTLP LPAGDGDHAV LALAFFSGQN GGNMDMLNTA FLKGMEEANK 1020 FLPTNNSLLI DLEDTSGQHL PRDSNLSRAF ATIQEEEGRG NGRGRKNRLN WDDLEAETCR 1080 KSKLMVPEPE ETGEKVDEMI VNGRELCLKE MEALRITMGS DAKKNTRKGK GKSAKGMWSA 1140 DEAVDLSTLL IHCAQAVATD NCRSATELLR QIKQHSSPRG DATQRLAHCF AEGLEARLAG 1200 SGSQVYRSLM AERISVVEYL KAYQLYLAAS CFKMMAFKFS NMTIFKVIAG RKKVHIVDYG 1260 IQYGFQWPSL LGYMATLKGG PPQVRITGID LPQPGFRPAS RIEETGRRLS NCASQLGVPF 1320 KFHSITARWE TISADDLNID PDEVLIVNSI RNFGNLMDEG VDIDSPSPRD VVLSNICKMK 1380 PDAFILFVMN ASYSAPFFVT RFREALFFHS AMFDMLDATA PRENHQRFLV ERGLFRKCAL 1440 NVVACEGSDR VERPETYKQW QVRNRRAGLR QLPLDPDVVK AVREKVREQY HKDFVIDVDH 1500 QWLLEGWKGR ILYAMSTWVA DDAISEL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-42 | 419 | 1519 | 25 | 379 | Protein SCARECROW |
5b3h_A | 1e-42 | 419 | 1519 | 24 | 378 | Protein SCARECROW |
5b3h_D | 1e-42 | 419 | 1519 | 24 | 378 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU976095 | 0.0 | EU976095.1 Zea mays clone 622740 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826966.1 | 0.0 | scarecrow-like protein 30 | ||||
TrEMBL | A0A2S3IFW6 | 0.0 | A0A2S3IFW6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha00317.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-144 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H00105.1 |