PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pahal.H00103.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 627aa MW: 70105.3 Da PI: 6.9244

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H00103.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	342.2	8.9e-105	246	617	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 lLl+cA+av+++d ++a+ lLa+++ ++s++gd+ qRla++f+e+L+arla+++s+ly++l +++ts +++ l+a++lf ++ + k+++ Pahal.H00103.1 246 HALLLRCAQAVATDDRRCAHDLLAQVRRHSSSTGDAAQRLAHCFAEGLEARLAGTGSRLYHSLMVRPTS---VVDFLKAYQLFMAACCCKKVAFT 337 579***************************************************************9...******************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 N++I +av+g +r+Hi+D++i++G+QWp Ll+ La+ ++gpp++RiTg++ p++g + ++eetg+rL++ A+elgvpf+f+ +a + e++ Pahal.H00103.1 338 FSNKTIFDAVAGRRRLHIVDYGINYGFQWPGLLRGLAAMQGGPPEVRITGIDLPQPGfrPAYQIEETGRRLTNCARELGVPFKFRG-IAAKRETI 431 ****************************************************99999*********************.69999* PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 ++e+L+++p E+l+V++ + +l+desv l +rd+vL +++++P+v+++ + ++++ F +rf e l y sa fd lea++pr+s+er Pahal.H00103.1 432 SPEDLDIDPAEVLVVSSLCHFRHLMDESVVLGRpsPRDQVLGNIRRMRPDVFIHGVINGAYGTTYFPTRFRELLFYTSAQFDLLEATVPRDSQER 526 **************************99876669******************************************************* PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +Er ++gr+++nv+acega+r+er et+++W++r ++aG++++pl+ +++k + ++ + + + v+e++ +l+ Wk+r L+ +S W Pahal.H00103.1 527 LLIERDIFGRSAMNVIACEGADRVERPETYKQWQARNQRAGLRQLPLKPQVVKVVLDKVKDNYHKDFVVDEDQSWLLHRWKGRVLYGLSTW 617 ***********************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.128	219	598	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-102	246	617	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence Send to blast
MAAAPEEFLF VHPEPPSPSV FLDLPPTPRR DDPAAFDDMA LPYIARLLMD EEAAGEDSFF 60 YQYPDHPALL QAQLPFAQIL SENTASPSVS ADTEARRGSS DSDHSPTLGS PAADHATDMV 120 TSAFLKGMEE ATKFLPTNYA LLLNHNSVDE AVNGGHARGR KNNRHAAGYE YDDADPEQKA 180 RRATKLVAPE PDEDGARQMF DDMMLRERDI CMKGAQQRLT VDANHKAPRR RRRRGGTSTD 240 DAVDLHALLL RCAQAVATDD RRCAHDLLAQ VRRHSSSTGD AAQRLAHCFA EGLEARLAGT 300 GSRLYHSLMV RPTSVVDFLK AYQLFMAACC CKKVAFTFSN KTIFDAVAGR RRLHIVDYGI 360 NYGFQWPGLL RGLAAMQGGP PEVRITGIDL PQPGFRPAYQ IEETGRRLTN CARELGVPFK 420 FRGIAAKRET ISPEDLDIDP AEVLVVSSLC HFRHLMDESV VLGRPSPRDQ VLGNIRRMRP 480 DVFIHGVING AYGTTYFPTR FRELLFYTSA QFDLLEATVP RDSQERLLIE RDIFGRSAMN 540 VIACEGADRV ERPETYKQWQ ARNQRAGLRQ LPLKPQVVKV VLDKVKDNYH KDFVVDEDQS 600 WLLHRWKGRV LYGLSTWVAD DATSSR*

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence Send to blast

MAAAPEEFLF VHPEPPSPSV FLDLPPTPRR DDPAAFDDMA LPYIARLLMD EEAAGEDSFF  60
YQYPDHPALL QAQLPFAQIL SENTASPSVS ADTEARRGSS DSDHSPTLGS PAADHATDMV  120
TSAFLKGMEE ATKFLPTNYA LLLNHNSVDE AVNGGHARGR KNNRHAAGYE YDDADPEQKA  180
RRATKLVAPE PDEDGARQMF DDMMLRERDI CMKGAQQRLT VDANHKAPRR RRRRGGTSTD  240
DAVDLHALLL RCAQAVATDD RRCAHDLLAQ VRRHSSSTGD AAQRLAHCFA EGLEARLAGT  300
GSRLYHSLMV RPTSVVDFLK AYQLFMAACC CKKVAFTFSN KTIFDAVAGR RRLHIVDYGI  360
NYGFQWPGLL RGLAAMQGGP PEVRITGIDL PQPGFRPAYQ IEETGRRLTN CARELGVPFK  420
FRGIAAKRET ISPEDLDIDP AEVLVVSSLC HFRHLMDESV VLGRPSPRDQ VLGNIRRMRP  480
DVFIHGVING AYGTTYFPTR FRELLFYTSA QFDLLEATVP RDSQERLLIE RDIFGRSAMN  540
VIACEGADRV ERPETYKQWQ ARNQRAGLRQ LPLKPQVVKV VLDKVKDNYH KDFVVDEDQS  600
WLLHRWKGRV LYGLSTWVAD DATSSR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	9e-43	249	617	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	233	RRRRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827844.1	0.0	scarecrow-like protein 9
TrEMBL	A0A2T8IAG9	0.0	A0A2T8IAG9_9POAL; Uncharacterized protein
STRING	Pavir.J39141.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-137	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pahal.H00103.1