PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pahal.H00102.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 301aa MW: 32569.7 Da PI: 5.9993

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H00102.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	55.2	1.5e-17	212	298	3	93
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 ++Ll+cA+av + d + a++lL++++ +asp+gd++qRla +f+++L+arla+++s++y++l++ +t+ e l+a++lf ++ + k+ Pahal.H00102.1 212 HTLLHCAKAVID-DRRSADELLKQIKVHASPTGDATQRLAYCFAQGLEARLAGTGSQVYRSLTADRTP---LLEFLKAYQLFMSTCCFRKV 298 89******97.8999*****************************************999999...9**********9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.082	184	300	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.1E-15	212	298	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MVPRVFPGDA DEAASSYLNL SHIALLMEEE EEEDVAELSP DHPALLYAQQ PFCQILSGAP 60 FSPDQGPVFP GDRGSLNGCG HDKEYSTDMF TAAFFRGVEE ATKFLPADTA EKPLRSKESA 120 GGRGRRDRYS GGGGEQEAEA GRASKLATAE SAEAGAREMF DEMMLRGFDA CSKGMGGLTI 180 SMENVPATDN KKAGKRTRTR GKRRAAKVVD LHTLLHCAKA VIDDRRSADE LLKQIKVHAS 240 PTGDATQRLA YCFAQGLEAR LAGTGSQVYR SLTADRTPLL EFLKAYQLFM STCCFRKVEG 300 *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003564369.1	6e-64	scarecrow-like protein 34
TrEMBL	A0A3L6PJW3	0.0	A0A3L6PJW3_PANMI; Scarecrow-like protein 14
STRING	Pavir.J35282.1.p	1e-179	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	2e-28	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pahal.H00102.1